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Usage
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See Tutorial.pdf for complete installation and usage instructions.

To install MSMBuilder:

python setup.py build
python setup.py install

Web Based Documentation
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Are you curious about how the MSMBuilder internals work, or would you like to  use the MSMBuilder libraries in your own project?

Check out the web based documentation of the libraries at http://msmbuilder.readthedocs.org/en/latest/index.html

Contributing
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Have you found a bug? Do you have an idea for a great new feature, or a gripe about an existing one? Have you written some code that you'd like to contribute to MSMBuilder? Awesome! We'd love to have your contribution! 

MSMBuilder is hosted on GitHub at https://github.com/SimTk/msmbuilder. Filing an "issue" such as a bug report of feature request is easy and will contribute to  the future development of MSMBuilder. Contributing code is easy too, just fork the repository and then submit a pull request. A few guidelines on contributing can be found at http://msmbuilder.readthedocs.org/en/latest/developer.html

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Extensible software for building Markov State Models for Biomolecular Conformational Dynamics

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