This directory contains code for the stroke lesion network mapping project.

This manuscript has been published HERE (preprint HERE)

If you are interested in using the matlab code to do lesion network mapping with LEAD DBS see scripts/NormativeConnectomes for the matlab code. While the code is commented and relatively readable I have no future plans to release this code in a more 'official' capacity, but I'm happy to answer questions. Most of the hard work is all within the LEAD DBS package and credit goes to Andreas Horn.

Folders should be organized like so:

project folder 
│
└───Data (not available online)
│   └───BehaviouralDatabase....xlsx
│   └───connectomes
│   │   └───conboundX (X references the age-limit of the normative connectomes)
│   │   │   └───parcellation (e.g., Schaefer + HO 214)
│   └───lesionMaps
│   │   └───1_Raw (original lesion maps)
│   │   └───2_Nii (converted)
│   │   └───3_rNii (coregistered to MNI space)
│   └───tracts
│       └───conboundX 
└───Docs (this repository)
    │    ...
    └─── Scripts

As of March 2020 the MCA code (from https://github.com/MaxHalford/prince) is only compatible with Pandas < 1. You are warned!