Annotates gene sequences with codon information and custom user sequences.

This program annotates sequences for user-submitted genes using data from Ensembl and outputs the annotation in a GenBank format file that can be opened by the ApE program (A plasmid Editor).

MacOS 10.13.1+ (OSX High Sierra or above) OR Microsoft Windows 7 or above

Access to Ensembl website (https://www.ensembl.org)

Annotated genome on Ensembl website

ApE program installed on computer (http://jorgensen.biology.utah.edu/wayned/ape/)

Python 3 dependencies: regex, xlrd, fuzzywuzzy

Matt E. McFaul - Contact at memcfaul@ucdavis.edu

Copyright 2017-2020 Matt E. McFaul

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.