A django web application for building, fitting, and analyzing mathematical models of molecular signaling networks. A test version is available at https://live.signetsim.org.
First, you need to create the following docker-compose.yml file:
version: '3.3'
services:
signetsim:
image: signetsim/signetsim
container_name: signetsim
volumes:
- signetsim_data:/SigNetSim/data
ports:
- "8080:80"
restart: always
volumes:
signetsim_data:
This will pull the latest signetsim image from Docker Hub, and run SigNetSim on port 8080:
docker-compose up -d signetsim
docker run -p 8080:80 -d signetsim/signetsim
The server will run on localhost:8080.
If you want to locally store persistent data, use :
docker run -p 8080:80 -v <data folder>:/SigNetSim/data -d signetsim/signetsim
If you want to run it on a different port :
docker run -p <port>:80 -d signetsim/signetsim
sudo bash scripts/install.sh [options]
--python 2|3 : Choose your python version (default: 3)
--port port-number : Port on which signetsim will run (default: 80)
The server will run on localhost. Tested for ubuntu, debian, opensuse and centos.
Copyright (C) 2016-2018 Vincent Noel (contact@vincent-noel.fr)
SigNetSim is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
SigNetSim is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with SigNetSim. If not, see http://www.gnu.org/licenses/.
This program was developed within the CeTICS project, at the Butantan Institute.
The work was supported by grants #12/20186-9, #13/07467-1, and #13/24212-7 of the São Paulo Research Foundation (FAPESP) and fellowships from CNPq.
