ImgPheno is a Python packages for extracting useful features from digital images.

See the nbclassify package for example usage of imgpheno.

This Python package has the following dependencies:

• NumPy
• OpenCV (3.4.x)
  • Python bindings
• Python (2.7.x)

For some of the example scripts you need additional dependencies:

• PyYAML

On Debian (based) systems, most dependencies can be installed from the software repository:

apt-get install python-numpy python-yaml
pip install opencv-python

More recent versions of some Python packages can be obtained via the Python Package Index:

pip install -r requirements.txt

The scripts in the tests folder perform some cursory unit tests (which are in permanent need of improvement and expansion). The test suite can be executed from the top level using the make test target.

The ImgPheno package can be installed from the GitHub repository:

git clone https://github.com/naturalis/imgpheno.git
cd imgpheno/
python setup.py install

Or if you have a source archive file:

pip install imgpheno-0.1.0.tar.gz