Visualisation tool for super-resolution localisation data

1. Install Python 2.7 Anaconda (http://docs.continuum.io/anaconda/)

2. Update the Anaconda installation by running

   $ conda update conda
   $ conda update anaconda
   

3. Make sure the following dependecies are installed

   $ conda install pyqt
   $ conda install -c soft-matter tifffile
   

4. Copy the SRVis folder to your computer

5. Run SRVis.py

   $ python SRVis.py
   

1. Get the tifffile.py module from (http://www.lfd.uci.edu/~gohlke/code/tifffile.py.html)

2. Copy tifffile.py into the SRVis/lib folder

3. Run SRVis.py

   $ python SRVis.py
   

• If running on Kubuntu make sure to do the following (see ContinuumIO/anaconda-issues#32 for more information)

  1. Put a file qt.conf in your anaconda installation directory, e.g. /home/user/bin/anaconda/bin/ and add the following

     [Paths]
     Plugins = '.'
     

  2. Clear the QT_PLUGIN_PATH variable, for example via (note this works only temporarily)

     $ export QT_PLUGIN_PATH=""
     

• I have been running it on a Windows machine. So it can work :)