GitHub - nsls-ii-mx/chymotrypsinogen

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
CLUSTERS.txt		CLUSTERS.txt
LICENSE		LICENSE
README		README
cctable.dat		cctable.dat
cell_base.csv		cell_base.csv
cellcluster.py		cellcluster.py
ellipsoid.py		ellipsoid.py
manual_coordinate_146.txt		manual_coordinate_146.txt

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The folder contains two main python files for color-coded data analysis.
- Ellipsoid.py generates the dendrogram and coordinate variation ellipsoid
- Cellcluster.py generates scatter plot for cell-based cluster visuallization

author: "Thu Nguyen"
copyright: "Copyright (C) 2020 Thu Nguyen"
license: "LGPL 2.1"
version: "1.0"

The files: cctable.dat, CLUSTERS.txt, manual_coordinate_146.txt are inputs of ellipsoid.py. Here we use height cutoff at 1.0 to get the output of the paper
The files: cell_base.cvs is the input of cellcluster.py
The program runs with python 3.8