Python module implementating a hybrid model scheme for predictions of extracellular potentials (local field potentials, LFPs) of spiking neuron network simulations.
The module hybridLFPy was mainly developed in the Computational Neuroscience Group (http://compneuro.umb.no), Department of Mathemathical Sciences and Technology (http://www.nmbu.no/imt), at the Norwegian University of Life Sciences (http://www.nmbu.no), Aas, Norway, in collaboration with Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6), Juelich Research Centre and JARA, Juelich, Germany (http://www.fz-juelich.de/inm/inm-6/EN/).
Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada, Sonja Grün, Markus Diesmann, Gaute T. Einevoll; Hybrid Scheme for Modeling Local Field Potentials from Point-Neuron Networks, Cerebral Cortex, Volume 26, Issue 12, 1 December 2016, Pages 4461–4496, https://doi.org/10.1093/cercor/bhw237
Bibtex source: ::
@article{doi:10.1093/cercor/bhw237,
author = {Hagen, Espen and Dahmen, David and Stavrinou, Maria L. and Lindén, Henrik and Tetzlaff, Tom and van Albada, Sacha J. and Grün, Sonja and Diesmann, Markus and Einevoll, Gaute T.},
title = {Hybrid Scheme for Modeling Local Field Potentials from Point-Neuron Networks},
journal = {Cerebral Cortex},
volume = {26},
number = {12},
pages = {4461-4496},
year = {2016},
doi = {10.1093/cercor/bhw237},
URL = { + http://dx.doi.org/10.1093/cercor/bhw237},
eprint = {/oup/backfile/content_public/journal/cercor/26/12/10.1093_cercor_bhw237/2/bhw237.pdf}
}
Slides from OCNS 2015 meeting tutorial T2: Modeling and analysis of extracellular potentials <http://www.cnsorg.org/cns-2015-tutorials#t2>_ hosted in Prague, Czech Republic on LFPy and hybridLFPy: CNS2015_LFPy_tutorial.pdf <http://LFPy.github.io/downloads/CNS2015_LFPy_tutorial.pdf>_
This software is released under the General Public License (see LICENSE file).
This software comes without any form of warranty.
First download all the hybridLFPy source files using git
(http://git-scm.com). Open a terminal window and type:
::
cd $HOME/where/to/put/hybridLFPy
git clone https://github.com/INM-6/hybridLFPy.git
To use hybridLFPy from any working folder without copying files, run:
::
(sudo) python setup.py develop (--user)
Installing it is also possible, but not recommended as things might change with pulls from the repository: ::
(sudo) python setup.py install (--user)
Some example script(s) on how to use this module
Source files for autogenerated documentation using Sphinx.
To compile documentation source files in this directory using sphinx, use: ::
sphinx-build -b html docs documentation
The sphinx-generated html documentation can be accessed at http://INM-6.github.io/hybridLFPy