GitHub - peterjfoster/eLife: Active Contraction of Microtubule Networks

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
Fixed_Profiles.mat		Fixed_Profiles.mat
Get_alpha_and_beta.ipynb		Get_alpha_and_beta.ipynb
LICENSE.txt		LICENSE.txt
Profile_fitting_example.ipynb		Profile_fitting_example.ipynb
README.txt		README.txt
Velocity_timecourse.mat		Velocity_timecourse.mat
contract.py		contract.py
getfits_v2.m		getfits_v2.m
intensity_plot.m		intensity_plot.m

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Python code by Sebastian Fürthauer and MATLAB code by Peter Foster

Use intensity_plot.m to extract density profiles from images of contracting
networks averaged over the lengths of the microfluidic channels. Then,
Profile_fitting_example.ipynb is used to fit simulations from the Active Fluid
model to the experimental data.

The python Code depends on numpy, scipy and ipython, which are open source
projects.