GitHub - portokalh/wuconnectomes: dipy based connectomes

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 325 Commits
JSdipy		JSdipy
debugger_files		debugger_files
gunnies		gunnies
side_projects		side_projects
.bashrc		.bashrc
AMD_ref_MDT_to_subj.py		AMD_ref_MDT_to_subj.py
APOE22APOE33APOE44VolumesFA062620WithAges.xlsx		APOE22APOE33APOE44VolumesFA062620WithAges.xlsx
APOE_to_RASer.py		APOE_to_RASer.py
BIAC_tools.py		BIAC_tools.py
Bundle based registration-for loop- Gen3&4-2way-WithFA.ipynb		Bundle based registration-for loop- Gen3&4-2way-WithFA.ipynb
DTC_bvecorientchecker.py		DTC_bvecorientchecker.py
DTC_launcher_ADDecode.py		DTC_launcher_ADDecode.py
DTC_launcher_AMD.py		DTC_launcher_AMD.py
DTC_launcher_APOE.py		DTC_launcher_APOE.py
DTC_launcher_APOE_six_subj.py		DTC_launcher_APOE_six_subj.py
DTC_launcher_APOE_six_subj_hippocampus.py		DTC_launcher_APOE_six_subj_hippocampus.py
DTC_launcher_APOE_usepickles.py		DTC_launcher_APOE_usepickles.py
DTC_launcher_allarguments_WIP.py		DTC_launcher_allarguments_WIP.py
DTC_launcher_arguments_test.py		DTC_launcher_arguments_test.py
DTC_launcher_bvecorientation_checker.py		DTC_launcher_bvecorientation_checker.py
DTC_launcher_bvecorientation_checker_APOE202110.py		DTC_launcher_bvecorientation_checker_APOE202110.py
DTC_launcher_epilepsy.py		DTC_launcher_epilepsy.py
DTC_launcher_wenlin.py		DTC_launcher_wenlin.py
DTC_launcher_whitson.py		DTC_launcher_whitson.py
DTC_launcher_whitson_test.py		DTC_launcher_whitson_test.py
DTI_orient_tests.py		DTI_orient_tests.py
Daemonprocess.py		Daemonprocess.py
QCLab_interrogate.py		QCLab_interrogate.py
SAMBA_nii_trk_toMDT.py		SAMBA_nii_trk_toMDT.py
SAMBA_prep_ADDecode.py		SAMBA_prep_ADDecode.py
SAMBA_prep_ADDecode_makeshortcuts.py		SAMBA_prep_ADDecode_makeshortcuts.py
SAMBA_prep_AMD.py		SAMBA_prep_AMD.py
SAMBA_prep_AMD_makeshortcuts.py		SAMBA_prep_AMD_makeshortcuts.py
SAMBA_prep_APOE_18abb.py		SAMBA_prep_APOE_18abb.py
SAMBA_prep_APOE_20abb.py		SAMBA_prep_APOE_20abb.py
SAMBA_prep_APOE_makeshortcuts.py		SAMBA_prep_APOE_makeshortcuts.py
SAMBA_prep_Chavez.py		SAMBA_prep_Chavez.py
SAMBA_prep_Chavez_makeshortcuts.py		SAMBA_prep_Chavez_makeshortcuts.py
SAMBA_prep_epilepsy.py		SAMBA_prep_epilepsy.py
SAMBA_to_DTC.py		SAMBA_to_DTC.py
Update_allcsv.py		Update_allcsv.py
argument_tools.py		argument_tools.py
basic_LPCA_denoise.py		basic_LPCA_denoise.py
bvec_converter.py		bvec_converter.py
bvec_handler.py		bvec_handler.py
check_subject_lists.py		check_subject_lists.py
combineinfo_18readable.py		combineinfo_18readable.py
compare_atlas.py		compare_atlas.py
computer_nav.py		computer_nav.py
connectome_handler.py		connectome_handler.py
convert_atlas_mask.py		convert_atlas_mask.py
create_backported_labels.py		create_backported_labels.py
denoise_processes.py		denoise_processes.py
dif_to_trk.py		dif_to_trk.py
diff_preprocessing.py		diff_preprocessing.py
diffusion_preprocessing.py		diffusion_preprocessing.py
diffusion_preprocessing_old.py		diffusion_preprocessing_old.py
downsample_TRK_folder.py		downsample_TRK_folder.py
drop_duplicates.py		drop_duplicates.py
epilepsy_reduce.py		epilepsy_reduce.py
excel_management.py		excel_management.py
figures_handler.py		figures_handler.py
file_tools.py		file_tools.py
fix_downsample_trk_files.py		fix_downsample_trk_files.py
fix_trk_files.py		fix_trk_files.py
get_connectomics_params.py		get_connectomics_params.py
get_groupings.py		get_groupings.py
get_tract_parameters_WIP.py		get_tract_parameters_WIP.py
getrunno_to_ID_APOE.py		getrunno_to_ID_APOE.py
labels_converter.py		labels_converter.py
mac_aliashandling.py		mac_aliashandling.py
mask_handler.py		mask_handler.py
move_specificfiles.py		move_specificfiles.py
move_trk_ADDecode.py		move_trk_ADDecode.py
move_trk_AMD.py		move_trk_AMD.py
move_trk_all.py		move_trk_all.py
nifti_handler.py		nifti_handler.py
nikhiltest.py		nikhiltest.py
nrrdfileconvert.py		nrrdfileconvert.py
registration_handler_WIP.py		registration_handler_WIP.py
rename_APOEold_files.py		rename_APOEold_files.py
rush_create_tracts.py		rush_create_tracts.py
saveslices_WIP.py		saveslices_WIP.py
select_APOE_subgroups.py		select_APOE_subgroups.py
stnpca_new_withRidge.m		stnpca_new_withRidge.m
streamline_average.py		streamline_average.py
streamline_average_ADDecode.py		streamline_average_ADDecode.py
streamline_average_ADDecode_100.py		streamline_average_ADDecode_100.py
streamline_average_ADDecode_prep.py		streamline_average_ADDecode_prep.py
streamline_average_AMD.py		streamline_average_AMD.py
streamline_average_prep.py		streamline_average_prep.py
streamline_average_view.ipynb		streamline_average_view.ipynb
streamline_bundle_stats.ipynb		streamline_bundle_stats.ipynb
streamline_bundle_stats.py		streamline_bundle_stats.py
streamline_bundle_view.py		streamline_bundle_view.py
streamline_fa_view.py		streamline_fa_view.py
streamline_nocheck.py		streamline_nocheck.py
streamline_singlesubj_view.py		streamline_singlesubj_view.py
streamline_stats_figuremake.R		streamline_stats_figuremake.R
tract_eval.py		tract_eval.py

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dipy based connectomes

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