/
claim_model.py
104 lines (71 loc) · 1.59 KB
/
claim_model.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
#%%
import numpy as np
import scipy.stats as stats
import seaborn as sns
import matplotlib.pyplot as plt
import cmdstanpy
import os
cmdstanpy.utils.cxx_toolchain_path()
#%% [markdown]
## Generate Claims
# Simple generator of lognormal claims
#%%
# parameters
mu = 0.5
sigma = 1
dist = stats.lognorm(np.exp(mu), sigma)
# generate claims
claims = dist.rvs(size=1000)
# graph
sns.distplot(claims)
#%% [markdown]
# \begin{aligned}
# X_i & \sim LN(mu, sigma) \\
# mu & \sim N( \mu_{mu}, 1 ) \\
# sigma & \sim exp( \lambda_{sigma} ) \\
# \mu_{mu} & = 1 \\
# \lambda_{sigma} & = 1 \\
# \end{aligned}
# model
#%%
print(os.getcwd())
#%%
# priors
# prior predictive checks
mu_mu = 0.5
lambda_sigma = 1
samples = 100
prior_scale = stats.norm(mu_mu, 1).rvs(size=samples) # note stats.expon using scale notation so scale = 1 / lambda
prior_shape = stats.expon(1 / lambda_sigma).rvs(size=samples)
#%%
fig, ax = plt.subplots(1,1)
x = np.linspace(0, 200)
for sample in range(samples):
prior_dist = stats.lognorm(prior_scale[sample], prior_shape[sample])
ax.plot(x, prior_dist.pdf(x), 'r-', alpha=0.05)
#%%
# Build Model
file_path = os.path.join(os.getcwd(), 'model_1.stan')
model = cmdstanpy.CmdStanModel(stan_file=file_path)
model.name
model.stan_file
model.exe_file
print(model.code())
#%%
# Sample
stan_data = {
'N': claims.shape[0],
'claims': claims.tolist()
}
fit = model.sample(data=stan_data) #, output_dir='./model_output')
print(fit)
print(fit.sample.shape)
print(fit.summary())
print(fit.diagnose())
# diagnostics
# validations
# single dist
# add cat
# add variate
# add time
# %%