GitHub - samesense/loh: LOH visualization in melanoma

Name		Name	Last commit message	Last commit date
Latest commit History 96 Commits
testing		testing
.gitignore		.gitignore
README		README
bed_tools.py		bed_tools.py
call_class.py		call_class.py
cmp_murim_mutations_yusan.py		cmp_murim_mutations_yusan.py
cmp_murim_mutations_yusan_2.py		cmp_murim_mutations_yusan_2.py
cmp_snpchip_exomeseq.py		cmp_snpchip_exomeseq.py
cmp_snpchip_rnaseq.py		cmp_snpchip_rnaseq.py
cnv-seq.pl		cnv-seq.pl
cnv_plot.py		cnv_plot.py
cnv_seq_plot.py		cnv_seq_plot.py
convert_BED.py		convert_BED.py
count_changes.py		count_changes.py
count_mutation_types.py		count_mutation_types.py
find_errors.py		find_errors.py
full_cnv_seq.py		full_cnv_seq.py
funcs.R		funcs.R
get_het_blood_snps.py		get_het_blood_snps.py
get_novel_snps.py		get_novel_snps.py
global_settings.py		global_settings.py
grant_snv_table.py		grant_snv_table.py
liftOver		liftOver
loh.py		loh.py
loh2.py		loh2.py
mixture_runner.py		mixture_runner.py
mk_inherited_SNV_kinase_input.py		mk_inherited_SNV_kinase_input.py
mu2a.py		mu2a.py
mu2a_aa_chg_input.py		mu2a_aa_chg_input.py
murim_plot.py		murim_plot.py
mutations.py		mutations.py
novel_summary.py		novel_summary.py
pavement.py		pavement.py
plt.py		plt.py
r_plot.py		r_plot.py
same_het.py		same_het.py
snp.py		snp.py
somatic_changes.py		somatic_changes.py
summary_plot.py		summary_plot.py
test_ggplot2.py		test_ggplot2.py
utils.py		utils.py
yusik_cmp_snpchip_exomeseq.py		yusik_cmp_snpchip_exomeseq.py

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38 samples for normal and cancer. Look at LOH.

LOH visualization in melanoma

hostpathogen.blogspot.com/

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