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storm-analysis

This is a repository of code developed in the Zhuang Lab for analysis of STORM movies.

Some algorithms were developed in other groups and ported to Python. In this case the license applies only to our implementation of the code. If you plan to use the algorithm in a commercial product you should discuss this with the original developers.

The code should work with both Python2.7 and Python3.

Settings file and splines for the 2016 SMLM Challenge are here (261MB).

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Documentation

The project documentation and installation instructions are here

Docker

Docker images are available here.

Dependencies

C

Python

General Notes

Questions should be addressed to Hazen Babcock (hbabcock at fas.harvard.edu)

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Zhuang lab STORM movie analysis code

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