#SymTyper Webpage# A Bioinformatics Web Portal written in Django and themed with Bootstrap.
##Overview Web App for running SymTyper and viewing the outputs. ##Setup In coral/settings.py change SYMTYPER_HOME and SYMTYPER_IMG to the directory where Symtyper should output it's results and the place where the placment tree images should be copied to.

SYMTYPER_HOME = os.path.join(PROJECT_ROOT, "hmmer", "files") # Where Symtyper output goes
SYMTYPER_IMG = os.path.join(PROJECT_ROOT, "static", "img", "placement_trees") # Where placement tree image directory gets moved to

Install djcelery and a messaging broker like RabbitMQ. In coral/settings.py add djcelery to the list of INSTALLED_APPS and the following at the bottom of the file. BROKER_URL will be different depending on how RabbitMQ is set up.

import djcelery
djcelery.setup_loader()

BROKER_URL = 'amqp://worker:r@bb1t+w0rker+run@localhost:5672/portal'

##Usage Input fasta and ids file to run SymTyper.

Use the navbar to view the outputs.

##Credits Mahdi Belcaid, HIMB