The development of https://github.com/eead-csic-compbio/metagenome_Pfam_score and any updates and new versions of MEBS will be posted on this new website.
- python >= 3.6.2
- python modules:
- numpy
- matplotlib
- pandas
- seaborn
MEBS uses a few command line options that can be viewed by typing mebs.pl -h on the command line
perl mebs.pl -h
Program to compute MEBS for a set of genomic/metagenomic FASTA files in input folder.
Version: v1.0
usage: mebs.pl [options]
-help Brief help message
-input Folder containing FASTA peptide files (.faa) (required)
-type Nature of input sequences, either 'genomic' or 'metagenomic' (required)
-fdr Score cycles with False Discovery Rate 0.1 0.01 0.001 0.0001 (optional, default=0.01)
-cycles Show currently supported biogeochemical cycles
Readme needs to be updated