GitHub - tw7649116/TS: Torrent Suite

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
Analysis		Analysis
buildTools		buildTools
dbReports		dbReports
external		external
gpu		gpu
pipeline		pipeline
plugin		plugin
publishers		publishers
torrentPy		torrentPy
torrentR		torrentR
tsconfig		tsconfig
tsvm		tsvm
ups		ups
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.txt		README.txt
TSVersion		TSVersion

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Please see buildTools/BUILD.txt for build requirements and instructions.
Note especially the section BUILD SPECIFIC MODULES.

To build Analysis module, the command is:

    MODULES=Analysis ./buildTools/build.sh


Tips:

- If you are building this software for the first time, it's suggested to use
  a Docker container to build. That will reduce the chance of being blocked by
  any environment dependencies.

  https://hub.docker.com/r/iontorrent/tsbuild/

- Note that the code that was formerly in the ion-alignment and tmap packages is now
  rolled into the ion-analysis packages

- For standalone Torrent Variant Caller, please see the below link for instructions.
  There are supported Docker containers for various platform.

  http://updates.iontorrent.com/tvc_standalone/README.txt
  https://hub.docker.com/r/iontorrent/tvcbuild/