Experiments with Computer Graphics

This repo contains code that allows you to extract freesurfer surface/annotation data and export it to JSON.

I made these scripts so that I could use the freesurfer data in THREE.js. Note that the JSON that is outputted is not directly readable by the JSONLoader.

*.pial and *.aparc.a2009s.annot are included as examples

Usage

readsurface.py --filename [freesurfer surface file]

readannot.py --filename [freesurfer annotation file]

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
.gitignore		.gitignore
MSC06.L.pial.32k_fs_LR.surf.gii		MSC06.L.pial.32k_fs_LR.surf.gii
MSC06.L.pial.32k_fs_LR.surf.gii.json		MSC06.L.pial.32k_fs_LR.surf.gii.json
MSC06.L.pial.4k.surf.gii		MSC06.L.pial.4k.surf.gii
MSC06.L.pial.4k.surf.gii.json		MSC06.L.pial.4k.surf.gii.json
MSC06.R.pial.32k_fs_LR.surf.gii		MSC06.R.pial.32k_fs_LR.surf.gii
MSC06.R.pial.32k_fs_LR.surf.gii.json		MSC06.R.pial.32k_fs_LR.surf.gii.json
MSC06.R.pial.4k.surf.gii		MSC06.R.pial.4k.surf.gii
MSC06.R.pial.4k.surf.gii.json		MSC06.R.pial.4k.surf.gii.json
MSC06_networks_32k.dscalar.nii		MSC06_networks_32k.dscalar.nii
MSC06_networks_32k.dscalar.nii.json		MSC06_networks_32k.dscalar.nii.json
MSC06_networks_4k.dscalar.nii		MSC06_networks_4k.dscalar.nii
MSC06_networks_4k.dscalar.nii.json		MSC06_networks_4k.dscalar.nii.json
OrbitControls.js		OrbitControls.js
README.md		README.md
brain_wireframe.png		brain_wireframe.png
lh.aparc.a2009s.annot		lh.aparc.a2009s.annot
lh.pial		lh.pial
network.json		network.json
network.txt		network.txt
read_annot.py		read_annot.py
read_annot_nii.py		read_annot_nii.py
read_surface.py		read_surface.py
read_surface_gii.py		read_surface_gii.py
rh.aparc.a2009s.annot		rh.aparc.a2009s.annot
rh.pial		rh.pial
view.html		view.html

vanandrew/cgexperiments

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Experiments with Computer Graphics

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