This is a collection of scripts to perform pre and post processing of data for convergence detection tools.

Notable scripts include:

• annotate_diffsel.py, a tool to annotate phylogenetic trees with conditions (typically, convergent or non-convergent). It uses the graphical interface of ete3 to help annotate the trees. Currently, the output format is that of diffsel (i.e., it encodes conditions as branch lengths).

• annotate_convergent_tree.py, a tool to annotate phylogenetic trees with conditions (typically, convergent or non-convergent). It uses the graphical interface of ete3 to help annotate the trees or a pdf file. Currently, the output format is a Nhx tree with the tag "Condition" ( [&&NHX:Condition=0] means non-convergent and [&&NHX:Condition=1] means convergent).