vdj

Tools for analysing immune receptor sequences (antibodies and T cell receptors)

Dependencies:

To install, first update the necessary paths in params.py. Then,

python setup.py install
cp vdjconfig ~/.vdjconfig

Add the bin/ directory to the PATH manually, if desired.

Name		Name	Last commit message	Last commit date
Latest commit History 601 Commits
bin		bin
data		data
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
TODO		TODO
__init__.py		__init__.py
alignment.py		alignment.py
alignmentcore.c		alignmentcore.c
analysis.py		analysis.py
clustering.py		clustering.py
clusteringcore.c		clusteringcore.c
mongo.py		mongo.py
params.py		params.py
pipeline.py		pipeline.py
refseq.py		refseq.py
setup.py		setup.py
vdjconfig		vdjconfig

wangdi2014/vdj