A simple generative model of the mouse mesoscale connectome

This project uses the "linear model" published in Oh et al., (2014), which is downloadable from http://www.nature.com/nature/journal/v508/n7495/extref/nature13186-s4.xlsx .

All code used to generate figures is in the directory final_figures.

Name		Name	Last commit message	Last commit date
Latest commit History 570 Commits
Figures		Figures
FinalPresentation		FinalPresentation
extract		extract
final_figures		final_figures
graph_tools		graph_tools
metrics		metrics
movie		movie
network_plot		network_plot
paper_figure_scripts		paper_figure_scripts
pnas/figures		pnas/figures
poster_figure_scripts		poster_figure_scripts
random_graph		random_graph
scripts		scripts
stats_scripts		stats_scripts
test		test
test_scripts		test_scripts
.gitignore		.gitignore
DataBrowser.py		DataBrowser.py
README.md		README.md
Structure_coordinates_and_distances.mat		Structure_coordinates_and_distances.mat
area_compute.py		area_compute.py
area_plot.py		area_plot.py
areas_by_rank_script.py		areas_by_rank_script.py
aux_random_graphs.py		aux_random_graphs.py
bidirectionality.py		bidirectionality.py
brain_constants.py		brain_constants.py
brain_optimality.py		brain_optimality.py
brain_optimality_script.py		brain_optimality_script.py
collect_areas.py		collect_areas.py
color_scheme.py		color_scheme.py
compare_allen_vs_biophysical.py		compare_allen_vs_biophysical.py
control_net_script.py		control_net_script.py
lesion_areas_script.py		lesion_areas_script.py
lesion_graph_saved_data.py		lesion_graph_saved_data.py
network_compute.py		network_compute.py
network_gen.py		network_gen.py
node_swap_viz.py		node_swap_viz.py
plot_graphs.py		plot_graphs.py
plot_net.py		plot_net.py
print_net.py		print_net.py
reciprocity.csv		reciprocity.csv
requirements.txt		requirements.txt
rich_network_viz.py		rich_network_viz.py
shortest_path.py		shortest_path.py
standard_graphs.py		standard_graphs.py
standard_graphs_xy.py		standard_graphs_xy.py
tsne.py		tsne.py

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A simple generative model of the mouse mesoscale connectome

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