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main.py
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main.py
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import config
import numpy as np
import os
import time
import datetime
import json
from sklearn.metrics import average_precision_score
import sys
import os
import argparse
from PCNN_ATT import PCNN_ATT
import os
import pickle
from collections import defaultdict, Counter
import torch
import torch.nn as nn
from sklearn.preprocessing import MultiLabelBinarizer
from tensorboardX import SummaryWriter
from torch.autograd import Variable
from torch.utils.data import DataLoader
from tqdm import tqdm
from model import Policy
from tree import Tree
import sklearn.metrics
def calc_sl_loss(probs, update=True):
y_true = conf.batch_label
y_true = Variable(torch.from_numpy(y_true)).cuda().long()
loss = criterion(probs, y_true)
return loss
def forward_step_sl():
# TODO can reuse logits
if conf.flat_probs_only:
flat_probs = policy.base_model.forward_flat()
global_loss = calc_sl_loss(flat_probs, update=False)
policy.sl_loss = global_loss
return global_loss, flat_probs
else:
flat_probs = None
global_loss = 0
logits_layers, logits_total, flat_probs = policy.base_model()#
policy.bag_vec_layer0 = logits_layers[0]
policy.bag_vec_layer1 = logits_layers[1]
policy.bag_vec_layer2 = logits_layers[2]
# policy.bag_vec = logits
bag_ids = conf.bag_ids
cur_batch_size = len(bag_ids) #
cur_class_batch = np.zeros(cur_batch_size, dtype=int)
for layer in range(conf.n_layers):
conf.cur_layer = layer
next_classes_batch = tree.p2c_batch(cur_class_batch)#[batch,上一阶段标签的子标签],可以看成第n层及他之前的标
next_classes_batch_true, indices, next_class_batch, bag_ids = tree.get_next(cur_class_batch, next_classes_batch, bag_ids)# next_class_batch_true和indices都是相对位置
if len(indices) == 0:
break
policy.duplicate_bag_vec(indices)
cur_class_batch = cur_class_batch[indices]
next_classes_batch = next_classes_batch[indices]
probs = policy.step_sl(conf, cur_class_batch, next_classes_batch, next_classes_batch_true, indices)#
cur_class_batch = next_class_batch
###cal train step hierarchical
preds = torch.max(probs, dim = 1)[1].cpu().numpy()
preds = [next_classes_batch[i][preds[i]] for i in range(len(preds))]
conf.local_loss = policy.sl_loss
for i, var in enumerate(indices):
y_pred = preds[i]
y_true = tree.train_hierarchical_bag_label[bag_ids[i]]#list which is label
if y_pred != 1:
if layer == 0:
conf.predict_label2num[y_pred] += 1
conf.pred_not_na += 1
conf.acc_not_NA_local_layer0.add(y_pred in y_true)
elif layer == 1:
conf.acc_not_NA_local_layer1.add(y_pred in y_true)
elif layer == 2:
conf.acc_not_NA_local_layer2.add(y_pred in y_true)
elif y_pred == 1:
conf.acc_NA_local.add(y_pred in y_true)
policy.sl_loss = (1 - conf.global_ratio) * policy.sl_loss + conf.global_ratio * global_loss
return global_loss, flat_probs
def cal_train_one_step_flat(probs):
_, _output = torch.max(probs, dim = 1)
_output = _output.cpu().numpy()
for i, prediction in enumerate(_output):
if conf.batch_label[i] == 0:
conf.acc_NA_global.add(conf.batch_label[i] == prediction)
else:
conf.acc_not_NA_global.add(conf.batch_label[i] == prediction)
conf.acc_total_global.add(conf.batch_label[i] == prediction)
def train():
print("Star train model ", conf.out_model_name)
conf.set_train_model(policy.base_model)
best_auc = 0.0
best_p = None
best_r = None
best_epoch = 0
num_delete_bag = 0
if conf.pretrain_epoch != -1:
model_file = "./checkpoint/" + conf.pretrain_model_name + "_epoch_" +str(conf.pretrain_epoch)
policy.load_state_dict(torch.load(model_file))
policy.eval()
conf.set_test_model(policy.base_model)
conf.acc_NA_global.clear()
conf.acc_not_NA_global.clear()
conf.acc_total_global.clear()
conf.testModel = policy.base_model
auc, pr_x, pr_y = conf.test_one_epoch()
print("auc_flat:", auc)
for epoch in range(1, conf.max_epoch + 1):
conf.is_training = True
policy.train()
print('Epoch ' + str(epoch) + ' starts...')
loss_total = 0
np.random.shuffle(conf.train_order)
#local acc
conf.acc_NA_local.clear()
conf.acc_not_NA_local_layer0.clear()
conf.acc_not_NA_local_layer1.clear()
conf.acc_not_NA_local_layer2.clear()
conf.acc_total_local.clear()
conf.predict_label2num = defaultdict(int)
conf.pred_not_na = 0
#global acc
conf.acc_NA_global.clear()
conf.acc_not_NA_global.clear()
conf.acc_total_global.clear()
for batch_num in range(conf.train_batches):
conf.get_train_batch(batch_num)
conf.train_one_step()
global_loss, flat_probs = forward_step_sl()
policy_optimizer.zero_grad()
policy.sl_loss.backward()
policy_optimizer.step()
if conf.flat_probs_only:
cal_train_one_step_flat(flat_probs)
sys.stdout.write("Global Information: epoch %d step %d | loss: %f, NA accuracy: %f, not NA accuracy: %f, total accuracy: %f\r" % (epoch, batch_num, policy.sl_loss, conf.acc_NA_global.get(), conf.acc_not_NA_global.get(), conf.acc_total_global.get()))
else:
sys.stdout.write("Local Information: epoch %d step %d | loss: %f, NA acc: %f, layer0 accuracy: %f, layer1 accuracy: %f, layer2 accuracy: %f\r" % (epoch, batch_num, conf.local_loss, conf.acc_NA_local.get(), conf.acc_not_NA_local_layer0.get(), conf.acc_not_NA_local_layer1.get(), conf.acc_not_NA_local_layer2.get()))
sys.stdout.flush()
policy.sl_loss = 0
print("\ntrain:predict_label2num", conf.predict_label2num, "pred_not_na", conf.pred_not_na)
if epoch % conf.save_epoch == 0:
print('Train Epoch ' + str(epoch) + ' has finished')
test_epoch_by_all(epoch)
print('Saving model...')
if conf.flat_probs_only:
torch.save(policy.state_dict(), "./checkpoint/" + conf.pretrain_model_name + "_epoch_" + str(epoch))
else:
torch.save(policy.state_dict(), "./checkpoint/" + conf.out_model_name + "_epoch_" + str(epoch))
print("Finish training")
print("Best epoch = %d | auc = %f" % (best_epoch, best_auc))
print("Storing best result...")
def test_epoch_by_all(epoch):
# set test model
model_file = "./checkpoint/" + conf.out_model_name + "_epoch_" +str(epoch)
print('Test local: test_epoch_by_all model ' + model_file)
if not conf.is_training:
policy.load_state_dict(torch.load(model_file))
conf.is_training = False
policy.eval()
conf.set_test_model(policy.base_model)
#test local model
test_result_layer_0 = []
test_result = []
bagid_label2prob_dict = defaultdict()
conf.acc_NA_local.clear()
conf.acc_not_NA_local_layer0.clear()
conf.acc_not_NA_local_layer1.clear()
conf.acc_not_NA_local_layer2.clear()
conf.acc_total_local.clear()
#test global model for comparation
if conf.flat_probs_only:
conf.acc_NA_global.clear()
conf.acc_not_NA_global.clear()
conf.acc_total_global.clear()
conf.testModel = policy.base_model
auc, pr_x, pr_y = conf.test_one_epoch()
return
predict_label2num = defaultdict(int)
pred_not_na = 0
over = 0
for batch_num in tqdm(range(conf.test_batches)):
sen_num = conf.get_test_batch(batch_num)
conf.test_one_step()
logits = policy.base_model.test_hierarchical()
policy.bag_vec_test = logits
bag_ids = conf.bag_ids
cur_batch_size = len(bag_ids)
cur_class_batch = np.zeros(cur_batch_size, dtype=int)
indices = torch.from_numpy(np.array(range(len(bag_ids)))).cuda()
for layer in range(conf.n_layers):#
conf.cur_layer = layer
next_classes_batch = tree.p2c_batch(cur_class_batch)#
policy.get_test_bag_vec(next_classes_batch, indices)
h_probs = policy.step_sl_test(conf, cur_class_batch, next_classes_batch)
h_probs_np = h_probs.cpu().detach().numpy()
for i, var in enumerate(indices):
y_pred_classes = next_classes_batch[i]
y_true = tree.test_hierarchical_bag_label[bag_ids[i]]
cur_bag_id = bag_ids[i]
for j in range(len(y_pred_classes)):
y_pred = y_pred_classes[j]
if y_pred != 0:
bagid_label = str(cur_bag_id) + "_" + str(y_pred)
bagid_label2prob_dict[bagid_label] = float(h_probs_np[i][j])
indices, next_class_batch_pred = tree.get_next_all(cur_class_batch, next_classes_batch, bag_ids)
if len(indices) == 0:
break
bag_ids = [bag_ids[idx] for idx in indices]
cur_class_batch = next_class_batch_pred
def test():
best_epoch = None
best_auc = 0.0
best_p = None
best_r = None
best_p_4 = 0
best_test_result = None
if conf.flat_probs_only:
model_file = self.checkpoint_dir + conf.out_model_name + "_epoch_" +str(conf.test_epoch)
print('Test local: test_epoch_by_all model ' + model_file)
policy.load_state_dict(torch.load(model_file))
policy.eval()
conf.set_test_model(policy.base_model)
conf.acc_NA_global.clear()
conf.acc_not_NA_global.clear()
conf.acc_total_global.clear()
conf.testModel = policy.base_model
auc, pr_x, pr_y = conf.test_one_epoch()
print("auc_flat:", auc)
return
epochs = [conf.test_epoch]
for epoch in epochs:
auc, p_4, p, r, test_result = test_json(epoch)
if auc > best_auc:
best_auc = auc
best_p_4 = p_4
best_epoch = epoch
best_p = p
best_r = r
best_test_result = test_result
print("Finish testing epoch %d" % (epoch))
print("Best epoch = %d | auc = %f | p_recall4 = %f | p@100 = %f| P@200 = %f| P@300 = %f | P@1000 = %f | |P@2000 = %f| " % (best_epoch, best_auc, best_p_4, best_r[100], best_r[200], best_r[300], best_r[1000], best_r[2000]))
print("Storing best result...")
if not os.path.isdir(conf.test_result_dir):
os.mkdir(conf.test_result_dir)
best_out_file_x = conf.out_model_name + "_best_epoch_" + str(best_epoch) + "_x.npy"
best_out_file_y = conf.out_model_name + "_best_epoch_" + str(best_epoch) + "_y.npy"
np.save(os.path.join(conf.test_result_dir, best_out_file_x), best_p)
np.save(os.path.join(conf.test_result_dir, best_out_file_y), best_r)
file_name_all = "./test_result/best_epoch_" + str(best_epoch) + "_all" + ".txt"
file_name_pos = "./test_result/best_epoch_" + str(best_epoch) + "_pos" + ".txt"
file_name_neg = "./test_result/best_epoch_" + str(best_epoch) + "_neg" +".txt"
with open(file_name_all, "w") as file_all, open(file_name_pos, "w") as file_pos, open(file_name_neg, "w") as file_neg:
for i in tqdm(range(len(best_test_result))):
best_test_result[i].append(i)
print(best_test_result[i], file = file_all)
if best_test_result[i][0] == 1:
print(best_test_result[i], file = file_pos)
else:
print(test_result[i], file = file_neg)
print("Finish storing")
def test_json(epoch):
print("\nstart test epoch %d "%(epoch))
file_name = "./test_result/" + conf.out_model_name + "_epoch_" + str(epoch)+ ".json"
with open(file_name, "r") as file:
bagid_label2prob_dict = json.load(file)
print("read file from ", file_name)
print(len(bagid_label2prob_dict))
test_result = []
error = 0
lt_bag_100 = 0
lt_bag_100_hits_10 = 0
lt_bag_100_hits_15 = 0
lt_bag_100_hits_20 = 0
lt_label_100_dict = defaultdict(int)
lt_100_predict_10_dict = defaultdict(int)
lt_100_predict_15_dict = defaultdict(int)
lt_100_predict_20_dict = defaultdict(int)
lt_100_macro_10 = 0
lt_100_macro_15 = 0
lt_100_macro_20 = 0
lt_bag_200 = 0
lt_bag_200_hits_10 = 0
lt_bag_200_hits_15 = 0
lt_bag_200_hits_20 = 0
lt_label_200_dict = defaultdict(int)
lt_200_predict_10_dict = defaultdict(int)
lt_200_predict_15_dict = defaultdict(int)
lt_200_predict_20_dict = defaultdict(int)
lt_200_macro_10 = 0
lt_200_macro_15 = 0
lt_200_macro_20 = 0
for bag_id in tqdm(range(len(tree.test_hierarchical_bag_multi_label))):
y_true = tree.test_hierarchical_bag_multi_label[bag_id]
if bag_id in conf.re_bag_id:
continue
bag_id_prob = []
for i in range(1, len(conf.test_batch_attention_query)):
indices = conf.test_batch_attention_query[i]
predict_layer_0_index = str(bag_id) + "_" + str(indices[0])
predict_layer_1_index = str(bag_id) + "_" + str(indices[1])
predict_layer_2_index = str(bag_id) + "_" + str(indices[2])
label_layer_0_index = str(bag_id) + "_" + str(y_true[0])
label_layer_1_index = str(bag_id) + "_" + str(y_true[1])
label_layer_2_index = str(bag_id) + "_" + str(y_true[2])
predict_layer0_prob = bagid_label2prob_dict[predict_layer_0_index]
if indices[0] in [7,8]:
predict_layer1_prob = 1
else:
predict_layer1_prob = bagid_label2prob_dict[predict_layer_1_index]
if indices[1] in [27,34,28, 22, 20, 21, 33,29,31,30,25,24,32,39,40,11,13,14,15,9,10,42,18,27,19,41]:
predict_layer2_prob = 1
else:
predict_layer2_prob = bagid_label2prob_dict[predict_layer_2_index]
label_layer0_prob = bagid_label2prob_dict[label_layer_0_index]
label_layer1_prob = bagid_label2prob_dict[label_layer_1_index]
label_layer2_prob = bagid_label2prob_dict[label_layer_2_index]
if predict_layer_2_index in bagid_label2prob_dict:
predict_prob = predict_layer0_prob * predict_layer1_prob * predict_layer2_prob
label_prob = label_layer0_prob * label_layer1_prob * label_layer2_prob
ans = int(indices[2] in y_true)
test_result.append([ans, predict_prob, indices[2], predict_layer0_prob, predict_layer1_prob, predict_layer2_prob, y_true, label_prob, label_layer0_prob, label_layer1_prob, label_layer2_prob, bag_id])
bag_id_prob.append([indices[2], predict_prob, bag_id])
else:
print(predict_layer_0_index,predict_layer_1_index,predict_layer_2_index)
# print(set(y_true))
#print(conf.layer2_100, type(conf.layer2_100))
#print((set(y_true) & conf.layer2_100))
y_true = conf.data_test_hierarchical_label[bag_id]
if (set(y_true) & conf.layer2_100):
# print(set(y_true))
# print(conf.layer2_100)
lt_label_100_dict[max(y_true)] += 1
lt_bag_100 += 1
bag_id_prob = sorted(bag_id_prob, key = lambda x: x[1])
bag_id_prob = bag_id_prob[::-1]
bag_id_prob_10 = bag_id_prob[:10]
bag_id_prob_15 = bag_id_prob[:15]
bag_id_prob_20 = bag_id_prob[:20]
bag_id_prob_10 = [x[0] for x in bag_id_prob_10]
bag_id_prob_15 = [x[0] for x in bag_id_prob_15]
bag_id_prob_20 = [x[0] for x in bag_id_prob_20]
if (set(y_true) & set(bag_id_prob_10)):
lt_bag_100_hits_10 += 1
lt_100_predict_10_dict[max(y_true)] += 1
if (set(y_true) & set(bag_id_prob_15)):
lt_bag_100_hits_15 += 1
lt_100_predict_15_dict[max(y_true)] += 1
if (set(y_true) & set(bag_id_prob_20)):
lt_bag_100_hits_20 += 1
lt_100_predict_20_dict[max(y_true)] += 1
# print("\n\n")
if (set(y_true) & conf.layer2_200):
# print(set(y_true))
# print(conf.layer2_200)
lt_label_200_dict[max(y_true)] += 1
lt_bag_200 += 1
bag_id_prob = sorted(bag_id_prob, key = lambda x: x[1])
bag_id_prob = bag_id_prob[::-1]
bag_id_prob_10 = bag_id_prob[:10]
bag_id_prob_15 = bag_id_prob[:15]
bag_id_prob_20 = bag_id_prob[:20]
bag_id_prob_10 = [x[0] for x in bag_id_prob_10]
bag_id_prob_15 = [x[0] for x in bag_id_prob_15]
bag_id_prob_20 = [x[0] for x in bag_id_prob_20]
if (set(y_true) & set(bag_id_prob_10)):
lt_bag_200_hits_10 += 1
lt_200_predict_10_dict[max(y_true)] += 1
if (set(y_true) & set(bag_id_prob_15)):
lt_bag_200_hits_15 += 1
lt_200_predict_15_dict[max(y_true)] += 1
if (set(y_true) & set(bag_id_prob_20)):
lt_bag_200_hits_20 += 1
lt_200_predict_20_dict[max(y_true)] += 1
print("lt_label_100_dict", lt_label_100_dict)
print("lt_label_200_dict", lt_label_200_dict)
for label in lt_label_100_dict:
lt_100_predict_10_dict[label] = lt_100_predict_10_dict[label] / lt_label_100_dict[label]
lt_100_macro_10 += lt_100_predict_10_dict[label]
lt_100_predict_15_dict[label] = lt_100_predict_15_dict[label] / lt_label_100_dict[label]
lt_100_macro_15 += lt_100_predict_15_dict[label]
lt_100_predict_20_dict[label] = lt_100_predict_20_dict[label] / lt_label_100_dict[label]
lt_100_macro_20 += lt_100_predict_20_dict[label]
for label in lt_label_200_dict:
lt_200_predict_10_dict[label] = lt_200_predict_10_dict[label] / lt_label_200_dict[label]
lt_200_macro_10 += lt_200_predict_10_dict[label]
lt_200_predict_15_dict[label] = lt_200_predict_15_dict[label] / lt_label_200_dict[label]
lt_200_macro_15 += lt_200_predict_15_dict[label]
lt_200_predict_20_dict[label] = lt_200_predict_20_dict[label] / lt_label_200_dict[label]
lt_200_macro_20 += lt_200_predict_20_dict[label]
print("lt_100_macro_10", lt_100_macro_10, len(lt_label_100_dict), lt_100_macro_10/len(lt_label_100_dict))
print("lt_100_macro_15", lt_100_macro_15, len(lt_label_100_dict), lt_100_macro_15/len(lt_label_100_dict))
print("lt_100_macro_20", lt_100_macro_20, len(lt_label_100_dict), lt_100_macro_20/len(lt_label_100_dict))
print("lt_200_macro_10", lt_200_macro_10, len(lt_label_200_dict), lt_200_macro_10/len(lt_label_200_dict))
print("lt_200_macro_15", lt_200_macro_15, len(lt_label_200_dict), lt_200_macro_15/len(lt_label_200_dict))
print("lt_200_macro_20", lt_200_macro_20, len(lt_label_200_dict), lt_200_macro_20/len(lt_label_200_dict))
print("lt_bag_100", lt_bag_100)
print("lt_100_micro_10", lt_bag_100_hits_10/lt_bag_100)
print("lt_100_micro_15", lt_bag_100_hits_15/lt_bag_100)
print("lt_100_micro_20", lt_bag_100_hits_20/lt_bag_100)
print("lt_bag_200", lt_bag_200)
print("lt_200_micro_10", lt_bag_200_hits_10/lt_bag_200)
print("lt_200_micro_15", lt_bag_200_hits_15/lt_bag_200)
print("lt_200_micro_20", lt_bag_200_hits_20/lt_bag_200)
test_result = sorted(test_result, key = lambda x: x[1])
test_result = test_result[::-1]
pr_x = []
pr_y = []
correct = 0
p_4 = 0
for i, item in enumerate(test_result):
correct += item[0]
pr_y.append(float(correct) / (i + 1))
pr_x.append(float(correct) / conf.total_recall)
auc = sklearn.metrics.auc(x = pr_x, y = pr_y)
for i in range(len(pr_x)):
if pr_x[i] >= 0.4:
print("precision at relll@0.4")
p_4 = pr_y[i]
print(pr_x[i])
print(pr_y[i])
break
print("test auc_local: ", auc)
print("p_4", p_4)
return auc, p_4, pr_x, pr_y, test_result
if __name__ == "__main__":
conf = config.Config()
os.environ['CUDA_VISIBLE_DEVICES'] = conf.gpu
conf.load_train_data()
conf.load_test_data()
tree = Tree(conf)
conf.global_num_classes = tree.n_class
base_model = PCNN_ATT(conf)
policy = Policy(conf, tree.n_class, base_model)
policy.cuda()
policy_optimizer = torch.optim.SGD(policy.parameters(), lr = conf.policy_lr, weight_decay = conf.policy_weight_decay)
for name,parameters in policy.named_parameters():
print(name, parameters.size())
criterion = torch.nn.CrossEntropyLoss()
if conf.is_training :
train()
else:
test()