pip install py2cytoscape
pip install git+https://github.com/cytoscape/py2cytoscape.git
Package documentation can be found on https://py2cytoscape.readthedocs.io.
For contributing please check the wiki.
Full workflows can be found on the cytoscape/cytoscape-automation repo.
Ono, K. et al. (2015) CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Res, 4, 478