RNAMake is a toolkit for designing and optimizing RNA 3D structure. It allows the alignment between RNA motifs. These motif are small modular peices of RNA that are believed to fold independently, thus attaching them together with helix flanking both sides allows users of RNAMake to build large segments of RNA with a high success rate of forming the predicted structure in vitro.

git clone https://github.com/jyesselm/RNAMake.git
cd RNAMake
sudo pip install -r requirements.txt

To install call

python setup.py 

to compile, make sure you have cmake and ninja installed with their binaries set up in your $PATH. Then run:

python compile.py 

To run unit tests for python:

RNAMake/rnamake/unittests/run_unittests.sh

To run unit tests for C++ code:

cd RNAMAke/rnamake/lib/RNAMake/cmake/build/
python run_unittests.py