def scriptGF():
screen.clear()
screen.border(0)
screen.addstr(2, 2, "This is Gene Filter")
screen.addstr(4, 4, "Please enter a input file for Gene Filter")
screen.addstr(9, 4, "Please name the output file for Gene Filter")
screen.refresh()
firstClass = class1()
userInput = screen.getstr(6, 10, 60)
userOutput = screen.getstr(11, 10, 60)
try:
firstClass.filterLPs(userInput, userOutput)
screen.clear()
screen.border(0)
screen.addstr(2, 4, "Gene filter succes!")
screen.refresh()
time.sleep(3)
except:
curses.flash()
show_error("Invalid file name. Try again.")
if pos == 3 and x == ord('\n'):
scriptSM()
# MEME option (position 4)
if pos == 4 and x == ord('\n'):
scriptMEME()
# running all the scripts option (position 5)
if pos == 5 and x == ord('\n'):
screen.clear()
screen.border(0)
screen.addstr(2, 2, "Run all the scripts!")
screen.addstr(4, 4, "Please enter an input file for Gene Filter")
screen.addstr(9, 4, "Please type in path to MEME's bin folder")
screen.refresh()
firstClass = class1()
userInput = screen.getstr(6, 10, 60)
MEMEpath = screen.getstr(11, 10, 60)
userOutput = "GF_output"
try:
screen.clear()
screen.border(0)
screen.addstr(2, 2, "0% complete...")
screen.refresh()
time.sleep(1)
firstClass.filterLPs(userInput, userOutput)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "25% complete...")
screen.refresh()
secondClass = class2()
