Python pluralityConsensusAndVariants Examples

Example #1

File: test_plurality.py Project: xxz19900/GenomicConsensus

def test_plurality2():
    config = PluralityConfig(minConfidence=0, minCoverage=0)
    css, variants = pluralityConsensusAndVariants(
        StaggeredReads.referenceWindow, StaggeredReads.reference,
        StaggeredReads.hits, config)
    assert_equal(StaggeredReads.expectedPluralityConsensus, css.sequence)

    assert_equal(StaggeredReads.expectedPluralityVariants, variants)

Example #2

File: test_plurality.py Project: xxz19900/GenomicConsensus

def test_plurality1():
    css, variants = pluralityConsensusAndVariants(
        ForwardAndReverseReads.referenceWindow,
        ForwardAndReverseReads.reference, ForwardAndReverseReads.hits,
        PluralityConfig())

    assert_equal(ForwardAndReverseReads.expectedPluralityConsensus,
                 css.sequence)

    assert_equal(ForwardAndReverseReads.expectedPluralityVariants, variants)

Example #3

File: test_plurality.py Project: Mozhgann/GenomicConsensus

def test_plurality1():
    css, variants = pluralityConsensusAndVariants(ForwardAndReverseReads.referenceWindow,
                                                  ForwardAndReverseReads.reference,
                                                  ForwardAndReverseReads.hits,
                                                  PluralityConfig())

    assert_equal(ForwardAndReverseReads.expectedPluralityConsensus,
                 css.sequence)

    assert_equal(ForwardAndReverseReads.expectedPluralityVariants,
                 variants)

Example #4

File: test_plurality.py Project: Mozhgann/GenomicConsensus

def test_plurality2():
    config = PluralityConfig(minConfidence=0, minCoverage=0)
    css, variants = pluralityConsensusAndVariants(StaggeredReads.referenceWindow,
                                                  StaggeredReads.reference,
                                                  StaggeredReads.hits,
                                                  config)
    assert_equal(StaggeredReads.expectedPluralityConsensus,
                 css.sequence)

    assert_equal(StaggeredReads.expectedPluralityVariants,
                 variants)