Python main Examples

Example #1

File: test_sequence_searches.py Project: GeoffSCollins/PolTools

 def test_negative_strand_one_downstream_sequence_found(self, mock_stdout):
     sequence_searches.main([self.ccnt1_region_file, 'TCGCC,5:10'])
     output = self._parse_stdoutput(mock_stdout.getvalue())
     self.assertEqual(output, "True")

Example #2

File: test_sequence_searches.py Project: GeoffSCollins/PolTools

 def test_positive_strand_one_downstream_sequence_found(self, mock_stdout):
     sequence_searches.main([self.polr2a_region_file, 'GAAGC,5:10'])
     output = self._parse_stdoutput(mock_stdout.getvalue())
     self.assertEqual(output, "True")

Example #3

File: test_sequence_searches.py Project: GeoffSCollins/PolTools

 def test_negative_strand_inr_sequence_not_found(self, mock_stdout):
     sequence_searches.main([self.ccnt1_region_file, 'TGCAGC,-3:3'])
     output = self._parse_stdoutput(mock_stdout.getvalue())
     self.assertEqual(output, "True")

Example #4

File: test_sequence_searches.py Project: GeoffSCollins/PolTools

 def test_negative_strand_one_upstream_sequence_not_found(
         self, mock_stdout):
     sequence_searches.main([self.ccnt1_region_file, 'TTT,-10:-5'])
     output = self._parse_stdoutput(mock_stdout.getvalue())
     self.assertEqual(output, "False")

Example #5

File: test_sequence_searches.py Project: GeoffSCollins/PolTools

 def test_positive_strand_inr_sequence_found(self, mock_stdout):
     sequence_searches.main([self.polr2a_region_file, 'GCTGCT,-3:3'])
     output = self._parse_stdoutput(mock_stdout.getvalue())
     self.assertEqual(output, "True")