def testFailedJobsUniqueWf(self):
"""
Performance test of failedJobs with all failed jobs belonging
to the same workflow and the same task name
"""
loadList = []
for i in range(1, 5000):
loadList.append(self.jobConfig('wf1', '/wf1/task1', i, 'lfn1'))
dcs = DataCollectionService(url=self.testInit.couchUrl, database="wmcore-acdc-datacollectionsvc")
dcs.failedJobs(loadList)
return
def testFailedJobsUniqueWf(self):
"""
Performance test of failedJobs with all failed jobs belonging
to the same workflow and the same task name
"""
loadList = []
for i in range(1, 5000):
loadList.append(self.jobConfig('wf1', '/wf1/task1', i, 'lfn1'))
dcs = DataCollectionService(url=self.testInit.couchUrl, database="wmcore-acdc-datacollectionsvc")
dcs.failedJobs(loadList)
return
def createResubmitSpec(self, serverUrl, couchDB):
"""
_createResubmitSpec_
Create a bogus resubmit workload.
"""
self.site = "cmssrm.fnal.gov"
workload = WMWorkloadHelper(WMWorkload("TestWorkload"))
reco = workload.newTask("reco")
workload.setOwnerDetails(name = "evansde77", group = "DMWM")
# first task uses the input dataset
reco.addInputDataset(primary = "PRIMARY", processed = "processed-v1", tier = "TIER1")
reco.data.input.splitting.algorithm = "File"
reco.setTaskType("Processing")
cmsRunReco = reco.makeStep("cmsRun1")
cmsRunReco.setStepType("CMSSW")
reco.applyTemplates()
cmsRunRecoHelper = cmsRunReco.getTypeHelper()
cmsRunRecoHelper.addOutputModule("outputRECO",
primaryDataset = "PRIMARY",
processedDataset = "processed-v2",
dataTier = "TIER2",
lfnBase = "/store/dunkindonuts",
mergedLFNBase = "/store/kfc")
dcs = DataCollectionService(url = serverUrl, database = couchDB)
def getJob(workload):
job = Job()
job["task"] = workload.getTask("reco").getPathName()
job["workflow"] = workload.name()
job["location"] = self.site
job["owner"] = "evansde77"
job["group"] = "DMWM"
return job
testFileA = WMFile(lfn = makeUUID(), size = 1024, events = 1024)
testFileA.setLocation([self.site])
testFileA.addRun(Run(1, 1, 2))
testFileB = WMFile(lfn = makeUUID(), size = 1024, events = 1024)
testFileB.setLocation([self.site])
testFileB.addRun(Run(1, 3, 4))
testJobA = getJob(workload)
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
dcs.failedJobs([testJobA])
topLevelTask = workload.getTopLevelTask()[0]
workload.truncate("Resubmit_TestWorkload", topLevelTask.getPathName(),
serverUrl, couchDB)
return workload
def testFailedJobsScrambledWf(self):
"""
Performance test of failedJobs where jobs belong to 10 different
workflows and 3 different tasks
"""
loadList = []
for i in range(1, 5000):
wfName = "wf%d" % (i % 10)
taskName = "/wf%d/task%d" % (i % 10, i % 3)
loadList.append(self.jobConfig(wfName, taskName, i, '/file/name/lfn1'))
dcs = DataCollectionService(url=self.testInit.couchUrl, database="wmcore-acdc-datacollectionsvc")
dcs.failedJobs(loadList)
return
def testFailedJobsScrambledWf(self):
"""
Performance test of failedJobs where jobs belong to 10 different
workflows and 3 different tasks
"""
loadList = []
for i in range(1, 5000):
wfName = "wf%d" % (i % 10)
taskName = "/wf%d/task%d" % (i % 10, i % 3)
loadList.append(self.jobConfig(wfName, taskName, i, '/file/name/lfn1'))
dcs = DataCollectionService(url=self.testInit.couchUrl, database="wmcore-acdc-datacollectionsvc")
dcs.failedJobs(loadList)
return
def testC_ACDCTest(self):
"""
_ACDCTest_
Test whether we can get a goodRunList out of ACDC
and process it correctly.
"""
workload = self.createTestWorkload()
dcs = DataCollectionService(url=self.testInit.couchUrl,
database=self.testInit.couchDbName)
testFileA = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileA.addRun(Run(1, 1, 2))
testFileA.create()
testFileB = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileB.addRun(Run(1, 3))
testFileB.create()
testJobA = getJob(workload)
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testFileC = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileC.addRun(Run(1, 4, 6))
testFileC.create()
testJobB = getJob(workload)
testJobB.addFile(testFileC)
testFileD = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileD.addRun(Run(1, 7))
testFileD.create()
testJobC = getJob(workload)
testJobC.addFile(testFileD)
testFileE = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileE.addRun(Run(1, 11, 12))
testFileE.create()
testJobD = getJob(workload)
testJobD.addFile(testFileE)
testFileF = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileF.addRun(Run(2, 5, 6, 7))
testFileF.create()
testJobE = getJob(workload)
testJobE.addFile(testFileF)
testFileG = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileG.addRun(Run(2, 10, 11, 12))
testFileG.create()
testJobF = getJob(workload)
testJobF.addFile(testFileG)
testFileH = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileH.addRun(Run(2, 15))
testFileH.create()
testJobG = getJob(workload)
testJobG.addFile(testFileH)
testFileI = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileI.addRun(Run(3, 20))
testFileI.create()
testJobH = getJob(workload)
testJobH.addFile(testFileI)
testFileJ = File(lfn=makeUUID(),
size=1024,
events=1024,
locations="T1_US_FNAL_Disk")
testFileJ.addRun(Run(1, 9))
testFileJ.create()
testJobI = getJob(workload)
testJobI.addFile(testFileJ)
# dcs.failedJobs([testJobA, testJobB, testJobC, testJobD, testJobE,
# testJobF, testJobG, testJobH, testJobI])
dcs.failedJobs([testJobA, testJobD, testJobH])
baseName = makeUUID()
testFileset = Fileset(name=baseName)
testFileset.create()
testFileset.addFile(testFileA)
testFileset.addFile(testFileB)
testFileset.addFile(testFileC)
testFileset.addFile(testFileD)
testFileset.addFile(testFileE)
testFileset.addFile(testFileF)
testFileset.addFile(testFileG)
testFileset.addFile(testFileH)
testFileset.addFile(testFileI)
testFileset.addFile(testFileJ)
testFileset.commit()
testSubscription = Subscription(fileset=testFileset,
workflow=self.testWorkflow,
split_algo="LumiBased",
type="Processing")
testSubscription.create()
splitter = SplitterFactory()
jobFactory = splitter(package="WMCore.WMBS",
subscription=testSubscription)
jobGroups = jobFactory(
lumis_per_job=100,
halt_job_on_file_boundaries=False,
splitOnRun=True,
collectionName=workload.name(),
filesetName=workload.getTask("reco").getPathName(),
owner="evansde77",
group="DMWM",
couchURL=self.testInit.couchUrl,
couchDB=self.testInit.couchDbName,
performance=self.performanceParams)
self.assertEqual(jobGroups[0].jobs[0]['mask'].getRunAndLumis(),
{1: [[1, 2], [3, 3], [11, 12]]})
self.assertEqual(jobGroups[0].jobs[1]['mask'].getRunAndLumis(),
{3: [[20, 20]]})
return
class AccountantWorker(WMConnectionBase):
"""
Class that actually does the work of parsing FWJRs for the Accountant
Run through ProcessPool
"""
def __init__(self, config):
"""
__init__
Create all DAO objects that are used by this class.
"""
WMConnectionBase.__init__(self, "WMCore.WMBS")
myThread = threading.currentThread()
self.dbsDaoFactory = DAOFactory(package="WMComponent.DBS3Buffer",
logger=myThread.logger,
dbinterface=myThread.dbi)
self.getOutputMapAction = self.daofactory(
classname="Jobs.GetOutputMap")
self.bulkAddToFilesetAction = self.daofactory(
classname="Fileset.BulkAddByLFN")
self.bulkParentageAction = self.daofactory(
classname="Files.AddBulkParentage")
self.getJobTypeAction = self.daofactory(classname="Jobs.GetType")
self.getParentInfoAction = self.daofactory(
classname="Files.GetParentInfo")
self.setParentageByJob = self.daofactory(
classname="Files.SetParentageByJob")
self.setParentageByMergeJob = self.daofactory(
classname="Files.SetParentageByMergeJob")
self.setFileRunLumi = self.daofactory(classname="Files.AddRunLumi")
self.setFileLocation = self.daofactory(
classname="Files.SetLocationByLFN")
self.setFileAddChecksum = self.daofactory(
classname="Files.AddChecksumByLFN")
self.addFileAction = self.daofactory(classname="Files.Add")
self.jobCompleteInput = self.daofactory(classname="Jobs.CompleteInput")
self.setBulkOutcome = self.daofactory(classname="Jobs.SetOutcomeBulk")
self.getWorkflowSpec = self.daofactory(
classname="Workflow.GetSpecAndNameFromTask")
self.getJobInfoByID = self.daofactory(classname="Jobs.LoadFromID")
self.getFullJobInfo = self.daofactory(
classname="Jobs.LoadForErrorHandler")
self.getJobTaskNameAction = self.daofactory(
classname="Jobs.GetFWJRTaskName")
self.pnn_to_psn = self.daofactory(
classname="Locations.GetPNNtoPSNMapping").execute()
self.dbsStatusAction = self.dbsDaoFactory(
classname="DBSBufferFiles.SetStatus")
self.dbsParentStatusAction = self.dbsDaoFactory(
classname="DBSBufferFiles.GetParentStatus")
self.dbsChildrenAction = self.dbsDaoFactory(
classname="DBSBufferFiles.GetChildren")
self.dbsCreateFiles = self.dbsDaoFactory(
classname="DBSBufferFiles.Add")
self.dbsSetLocation = self.dbsDaoFactory(
classname="DBSBufferFiles.SetLocationByLFN")
self.dbsInsertLocation = self.dbsDaoFactory(
classname="DBSBufferFiles.AddLocation")
self.dbsSetChecksum = self.dbsDaoFactory(
classname="DBSBufferFiles.AddChecksumByLFN")
self.dbsSetRunLumi = self.dbsDaoFactory(
classname="DBSBufferFiles.AddRunLumi")
self.dbsGetWorkflow = self.dbsDaoFactory(classname="ListWorkflow")
self.dbsLFNHeritage = self.dbsDaoFactory(
classname="DBSBufferFiles.BulkHeritageParent")
self.stateChanger = ChangeState(config)
# Decide whether or not to attach jobReport to returned value
self.returnJobReport = getattr(config.JobAccountant,
'returnReportFromWorker', False)
# Store location for the specs for DBS
self.specDir = getattr(config.JobAccountant, 'specDir', None)
# maximum RAW EDM size for Repack output before data is put into Error dataset and skips PromptReco
self.maxAllowedRepackOutputSize = getattr(
config.JobAccountant, 'maxAllowedRepackOutputSize',
12 * 1024 * 1024 * 1024)
# ACDC service
self.dataCollection = DataCollectionService(
url=config.ACDC.couchurl, database=config.ACDC.database)
jobDBurl = sanitizeURL(config.JobStateMachine.couchurl)['url']
jobDBName = config.JobStateMachine.couchDBName
jobCouchdb = CouchServer(jobDBurl)
self.fwjrCouchDB = jobCouchdb.connectDatabase("%s/fwjrs" % jobDBName)
self.localWMStats = WMStatsWriter(config.TaskArchiver.localWMStatsURL,
appName="WMStatsAgent")
# Hold data for later commital
self.dbsFilesToCreate = []
self.wmbsFilesToBuild = []
self.wmbsMergeFilesToBuild = []
self.fileLocation = None
self.mergedOutputFiles = []
self.listOfJobsToSave = []
self.listOfJobsToFail = []
self.filesetAssoc = []
self.parentageBinds = []
self.parentageBindsForMerge = []
self.jobsWithSkippedFiles = {}
self.count = 0
self.datasetAlgoID = collections.deque(maxlen=1000)
self.datasetAlgoPaths = collections.deque(maxlen=1000)
self.dbsLocations = set()
self.workflowIDs = collections.deque(maxlen=1000)
self.workflowPaths = collections.deque(maxlen=1000)
self.phedex = PhEDEx()
self.locLists = self.phedex.getNodeMap()
return
def reset(self):
"""
_reset_
Reset all global vars between runs.
"""
self.dbsFilesToCreate = []
self.wmbsFilesToBuild = []
self.wmbsMergeFilesToBuild = []
self.fileLocation = None
self.mergedOutputFiles = []
self.listOfJobsToSave = []
self.listOfJobsToFail = []
self.filesetAssoc = []
self.parentageBinds = []
self.parentageBindsForMerge = []
self.jobsWithSkippedFiles = {}
gc.collect()
return
def loadJobReport(self, parameters):
"""
_loadJobReport_
Given a framework job report on disk, load it and return a
FwkJobReport instance. If there is any problem loading or parsing the
framework job report return None.
"""
# The jobReportPath may be prefixed with "file://" which needs to be
# removed so it doesn't confuse the FwkJobReport() parser.
jobReportPath = parameters.get("fwjr_path", None)
if not jobReportPath:
logging.error("Bad FwkJobReport Path: %s" % jobReportPath)
return self.createMissingFWKJR(parameters, 99999,
"FWJR path is empty")
jobReportPath = jobReportPath.replace("file://", "")
if not os.path.exists(jobReportPath):
logging.error("Bad FwkJobReport Path: %s" % jobReportPath)
return self.createMissingFWKJR(
parameters, 99999,
'Cannot find file in jobReport path: %s' % jobReportPath)
if os.path.getsize(jobReportPath) == 0:
logging.error("Empty FwkJobReport: %s" % jobReportPath)
return self.createMissingFWKJR(
parameters, 99998, 'jobReport of size 0: %s ' % jobReportPath)
jobReport = Report()
try:
jobReport.load(jobReportPath)
except Exception as ex:
msg = "Error loading jobReport %s\n" % jobReportPath
msg += str(ex)
logging.error(msg)
logging.debug("Failing job: %s\n" % parameters)
return self.createMissingFWKJR(parameters, 99997,
'Cannot load jobReport')
if len(jobReport.listSteps()) == 0:
logging.error("FwkJobReport with no steps: %s" % jobReportPath)
return self.createMissingFWKJR(
parameters, 99997,
'jobReport with no steps: %s ' % jobReportPath)
return jobReport
def isTaskExistInFWJR(self, jobReport, jobStatus):
"""
If taskName is not available in the FWJR, then tries to
recover it getting data from the SQL database.
"""
if not jobReport.getTaskName():
logging.warning(
"Trying to recover a corrupted FWJR for a %s job with job id %s"
% (jobStatus, jobReport.getJobID()))
jobInfo = self.getJobTaskNameAction.execute(
jobId=jobReport.getJobID(),
conn=self.getDBConn(),
transaction=self.existingTransaction())
jobReport.setTaskName(jobInfo['taskName'])
jobReport.save(jobInfo['fwjr_path'])
if not jobReport.getTaskName():
msg = "Report to developers. Failed to recover corrupted fwjr for %s job id %s" % (
jobStatus, jobReport.getJobID())
raise AccountantWorkerException(msg)
else:
logging.info(
"TaskName '%s' successfully recovered and added to fwjr id %s."
% (jobReport.getTaskName(), jobReport.getJobID()))
return
def __call__(self, parameters):
"""
__call__
Handle a completed job. The parameters dictionary will contain the job
ID and the path to the framework job report.
"""
returnList = []
self.reset()
for job in parameters:
logging.info("Handling %s" % job["fwjr_path"])
# Load the job and set the ID
fwkJobReport = self.loadJobReport(job)
fwkJobReport.setJobID(job['id'])
jobSuccess = self.handleJob(jobID=job["id"],
fwkJobReport=fwkJobReport)
if self.returnJobReport:
returnList.append({
'id': job["id"],
'jobSuccess': jobSuccess,
'jobReport': fwkJobReport
})
else:
returnList.append({'id': job["id"], 'jobSuccess': jobSuccess})
self.count += 1
self.beginTransaction()
# Now things done at the end of the job
# Do what we can with WMBS files
self.handleWMBSFiles(self.wmbsFilesToBuild, self.parentageBinds)
# handle merge files separately since parentage need to set
# separately to support robust merge
self.handleWMBSFiles(self.wmbsMergeFilesToBuild,
self.parentageBindsForMerge)
# Create DBSBufferFiles
self.createFilesInDBSBuffer()
# Handle filesetAssoc
if len(self.filesetAssoc) > 0:
self.bulkAddToFilesetAction.execute(
binds=self.filesetAssoc,
conn=self.getDBConn(),
transaction=self.existingTransaction())
# Move successful jobs to successful
if len(self.listOfJobsToSave) > 0:
idList = [x['id'] for x in self.listOfJobsToSave]
outcomeBinds = [{
'jobid': x['id'],
'outcome': x['outcome']
} for x in self.listOfJobsToSave]
self.setBulkOutcome.execute(binds=outcomeBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.jobCompleteInput.execute(
id=idList,
lfnsToSkip=self.jobsWithSkippedFiles,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.stateChanger.propagate(self.listOfJobsToSave, "success",
"complete")
# If we have failed jobs, fail them
if len(self.listOfJobsToFail) > 0:
outcomeBinds = [{
'jobid': x['id'],
'outcome': x['outcome']
} for x in self.listOfJobsToFail]
self.setBulkOutcome.execute(binds=outcomeBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.stateChanger.propagate(self.listOfJobsToFail, "jobfailed",
"complete")
# Arrange WMBS parentage
if len(self.parentageBinds) > 0:
self.setParentageByJob.execute(
binds=self.parentageBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
if len(self.parentageBindsForMerge) > 0:
self.setParentageByMergeJob.execute(
binds=self.parentageBindsForMerge,
conn=self.getDBConn(),
transaction=self.existingTransaction())
# Straighten out DBS Parentage
if len(self.mergedOutputFiles) > 0:
self.handleDBSBufferParentage()
if len(self.jobsWithSkippedFiles) > 0:
self.handleSkippedFiles()
self.commitTransaction(existingTransaction=False)
return returnList
def outputFilesetsForJob(self, outputMap, merged, moduleLabel):
"""
_outputFilesetsForJob_
Determine if the file should be placed in any other fileset. Note that
this will not return the JobGroup output fileset as all jobs will have
their output placed there.
"""
if moduleLabel not in outputMap:
logging.info("Output module label missing from output map.")
return []
outputFilesets = []
for outputFileset in outputMap[moduleLabel]:
if merged == False and outputFileset["output_fileset"] != None:
outputFilesets.append(outputFileset["output_fileset"])
else:
if outputFileset["merged_output_fileset"] != None:
outputFilesets.append(
outputFileset["merged_output_fileset"])
return outputFilesets
def addFileToDBS(self, jobReportFile, task, errorDataset=False):
"""
_addFileToDBS_
Add a file that was output from a job to the DBS buffer.
"""
datasetInfo = jobReportFile["dataset"]
dbsFile = DBSBufferFile(lfn=jobReportFile["lfn"],
size=jobReportFile["size"],
events=jobReportFile["events"],
checksums=jobReportFile["checksums"],
status="NOTUPLOADED")
dbsFile.setAlgorithm(appName=datasetInfo["applicationName"],
appVer=datasetInfo["applicationVersion"],
appFam=jobReportFile["module_label"],
psetHash="GIBBERISH",
configContent=jobReportFile.get('configURL'))
if errorDataset:
dbsFile.setDatasetPath(
"/%s/%s/%s" %
(datasetInfo["primaryDataset"] + "-Error",
datasetInfo["processedDataset"], datasetInfo["dataTier"]))
else:
dbsFile.setDatasetPath(
"/%s/%s/%s" %
(datasetInfo["primaryDataset"],
datasetInfo["processedDataset"], datasetInfo["dataTier"]))
dbsFile.setValidStatus(
validStatus=jobReportFile.get("validStatus", None))
dbsFile.setProcessingVer(ver=jobReportFile.get('processingVer', None))
dbsFile.setAcquisitionEra(
era=jobReportFile.get('acquisitionEra', None))
dbsFile.setGlobalTag(globalTag=jobReportFile.get('globalTag', None))
#TODO need to find where to get the prep id
dbsFile.setPrepID(prep_id=jobReportFile.get('prep_id', None))
dbsFile['task'] = task
for run in jobReportFile["runs"]:
newRun = Run(runNumber=run.run)
newRun.extend(run.lumis)
dbsFile.addRun(newRun)
dbsFile.setLocation(pnn=list(jobReportFile["locations"])[0],
immediateSave=False)
self.dbsFilesToCreate.append(dbsFile)
return
def findDBSParents(self, lfn):
"""
_findDBSParents_
Find the parent of the file in DBS
This is meant to be called recursively
"""
parentsInfo = self.getParentInfoAction.execute(
[lfn],
conn=self.getDBConn(),
transaction=self.existingTransaction())
newParents = set()
for parentInfo in parentsInfo:
# This will catch straight to merge files that do not have redneck
# parents. We will mark the straight to merge file from the job
# as a child of the merged parent.
if int(parentInfo["merged"]) == 1:
newParents.add(parentInfo["lfn"])
elif parentInfo['gpmerged'] == None:
continue
# Handle the files that result from merge jobs that aren't redneck
# children. We have to setup parentage and then check on whether or
# not this file has any redneck children and update their parentage
# information.
elif int(parentInfo["gpmerged"]) == 1:
newParents.add(parentInfo["gplfn"])
# If that didn't work, we've reached the great-grandparents
# And we have to work via recursion
else:
parentSet = self.findDBSParents(lfn=parentInfo['gplfn'])
for parent in parentSet:
newParents.add(parent)
return newParents
def addFileToWMBS(self, jobType, fwjrFile, jobMask, task, jobID=None):
"""
_addFileToWMBS_
Add a file that was produced in a job to WMBS.
"""
fwjrFile["first_event"] = jobMask["FirstEvent"]
if fwjrFile["first_event"] == None:
fwjrFile["first_event"] = 0
if jobType == "Merge" and fwjrFile["module_label"] != "logArchive":
setattr(fwjrFile["fileRef"], 'merged', True)
fwjrFile["merged"] = True
wmbsFile = self.createFileFromDataStructsFile(file=fwjrFile,
jobID=jobID)
if jobType == "Merge":
self.wmbsMergeFilesToBuild.append(wmbsFile)
else:
self.wmbsFilesToBuild.append(wmbsFile)
if fwjrFile["merged"]:
self.addFileToDBS(
fwjrFile, task, jobType == "Repack"
and fwjrFile["size"] > self.maxAllowedRepackOutputSize)
return wmbsFile
def _mapLocation(self, fwkJobReport):
for file in fwkJobReport.getAllFileRefs():
if file and hasattr(file, 'location'):
file.location = self.phedex.getBestNodeName(
file.location, self.locLists)
def handleJob(self, jobID, fwkJobReport):
"""
_handleJob_
Figure out if a job was successful or not, handle it appropriately
(parse FWJR, update WMBS) and return the success status as a boolean
"""
jobSuccess = fwkJobReport.taskSuccessful()
outputMap = self.getOutputMapAction.execute(
jobID=jobID,
conn=self.getDBConn(),
transaction=self.existingTransaction())
jobType = self.getJobTypeAction.execute(
jobID=jobID,
conn=self.getDBConn(),
transaction=self.existingTransaction())
if jobSuccess:
fileList = fwkJobReport.getAllFiles()
# consistency check comparing outputMap to fileList
# they should match except for some limited special cases
outputModules = set([])
for fwjrFile in fileList:
outputModules.add(fwjrFile['outputModule'])
if set(outputMap.keys()) == outputModules:
pass
elif jobType == "LogCollect" and len(
outputMap.keys()) == 0 and outputModules == set(
['LogCollect']):
pass
elif jobType == "Merge" and set(outputMap.keys()) == set([
'Merged', 'MergedError', 'logArchive'
]) and outputModules == set(['Merged', 'logArchive']):
pass
elif jobType == "Merge" and set(outputMap.keys()) == set([
'Merged', 'MergedError', 'logArchive'
]) and outputModules == set(['MergedError', 'logArchive']):
pass
elif jobType == "Express" and set(
outputMap.keys()).difference(outputModules) == set(
['write_RAW']):
pass
else:
failJob = True
if jobType in ["Processing", "Production"]:
cmsRunSteps = 0
for step in fwkJobReport.listSteps():
if step.startswith("cmsRun"):
cmsRunSteps += 1
if cmsRunSteps > 1:
failJob = False
if failJob:
jobSuccess = False
logging.error(
"Job %d , list of expected outputModules does not match job report, failing job",
jobID)
logging.debug("Job %d , expected outputModules %s", jobID,
sorted(outputMap.keys()))
logging.debug("Job %d , fwjr outputModules %s", jobID,
sorted(outputModules))
fileList = fwkJobReport.getAllFilesFromStep(
step='logArch1')
else:
logging.debug(
"Job %d , list of expected outputModules does not match job report, accepted for multi-step CMSSW job",
jobID)
else:
fileList = fwkJobReport.getAllFilesFromStep(step='logArch1')
if jobSuccess:
logging.info("Job %d , handle successful job", jobID)
else:
logging.warning("Job %d , bad jobReport, failing job", jobID)
# make sure the task name is present in FWJR (recover from WMBS if needed)
if len(fileList) > 0:
if jobSuccess:
self.isTaskExistInFWJR(fwkJobReport, "success")
else:
self.isTaskExistInFWJR(fwkJobReport, "failed")
# special check for LogCollect jobs
skipLogCollect = False
if jobSuccess and jobType == "LogCollect":
for fwjrFile in fileList:
try:
# this assumes there is only one file for LogCollect jobs, not sure what happend if that changes
self.associateLogCollectToParentJobsInWMStats(
fwkJobReport, fwjrFile["lfn"],
fwkJobReport.getTaskName())
except Exception as ex:
skipLogCollect = True
logging.error(
"Error occurred: associating log collect location, will try again\n %s"
% str(ex))
break
# now handle the job (unless the special LogCollect check failed)
if not skipLogCollect:
wmbsJob = Job(id=jobID)
wmbsJob.load()
outputID = wmbsJob.loadOutputID()
wmbsJob.getMask()
wmbsJob["fwjr"] = fwkJobReport
if jobSuccess:
wmbsJob["outcome"] = "success"
else:
wmbsJob["outcome"] = "failure"
for fwjrFile in fileList:
logging.debug("Job %d , register output %s", jobID,
fwjrFile["lfn"])
wmbsFile = self.addFileToWMBS(jobType,
fwjrFile,
wmbsJob["mask"],
jobID=jobID,
task=fwkJobReport.getTaskName())
merged = fwjrFile['merged']
moduleLabel = fwjrFile["module_label"]
if merged:
self.mergedOutputFiles.append(wmbsFile)
self.filesetAssoc.append({
"lfn": wmbsFile["lfn"],
"fileset": outputID
})
# LogCollect jobs have no output fileset
if jobType == "LogCollect":
pass
# Repack jobs that wrote too large merged output skip output filesets
elif jobType == "Repack" and merged and wmbsFile[
"size"] > self.maxAllowedRepackOutputSize:
pass
else:
outputFilesets = self.outputFilesetsForJob(
outputMap, merged, moduleLabel)
for outputFileset in outputFilesets:
self.filesetAssoc.append({
"lfn": wmbsFile["lfn"],
"fileset": outputFileset
})
# Check if the job had any skipped files, put them in ACDC containers
# We assume full file processing (no job masks)
if jobSuccess:
skippedFiles = fwkJobReport.getAllSkippedFiles()
if skippedFiles and jobType not in ['LogCollect', 'Cleanup']:
self.jobsWithSkippedFiles[jobID] = skippedFiles
# Only save once job is done, and we're sure we made it through okay
self._mapLocation(wmbsJob['fwjr'])
if jobSuccess:
self.listOfJobsToSave.append(wmbsJob)
else:
self.listOfJobsToFail.append(wmbsJob)
return jobSuccess
def associateLogCollectToParentJobsInWMStats(self, fwkJobReport,
logAchiveLFN, task):
"""
_associateLogCollectToParentJobsInWMStats_
Associate a logArchive output to its parent job
"""
inputFileList = fwkJobReport.getAllInputFiles()
requestName = task.split('/')[1]
keys = []
for inputFile in inputFileList:
keys.append([requestName, inputFile["lfn"]])
resultRows = self.fwjrCouchDB.loadView(
"FWJRDump",
'jobsByOutputLFN',
options={"stale": "update_after"},
keys=keys)['rows']
if len(resultRows) > 0:
#get data from wmbs
parentWMBSJobIDs = []
for row in resultRows:
parentWMBSJobIDs.append({"jobid": row["value"]})
#update Job doc in wmstats
results = self.getJobInfoByID.execute(parentWMBSJobIDs)
parentJobNames = []
if isinstance(results, list):
for jobInfo in results:
parentJobNames.append(jobInfo['name'])
else:
parentJobNames.append(results['name'])
self.localWMStats.updateLogArchiveLFN(parentJobNames, logAchiveLFN)
else:
#TODO: if the couch db is consistent with DB this should be removed (checking resultRow > 0)
#It need to be failed and retried.
logging.error(
"job report is missing for updating log archive mapping\n Input file list\n %s"
% inputFileList)
return
def createMissingFWKJR(self,
parameters,
errorCode=999,
errorDescription='Failure of unknown type'):
"""
_createMissingFWJR_
Create a missing FWJR if the report can't be found by the code in the
path location.
"""
report = Report()
report.addError("cmsRun1", 84, errorCode, errorDescription)
report.data.cmsRun1.status = "Failed"
return report
def createFilesInDBSBuffer(self):
"""
_createFilesInDBSBuffer_
It does the actual job of creating things in DBSBuffer
WARNING: This assumes all files in a job have the same final location
"""
if len(self.dbsFilesToCreate) == 0:
# Whoops, nothing to do!
return
dbsFileTuples = []
dbsFileLoc = []
dbsCksumBinds = []
runLumiBinds = []
selfChecksums = None
jobLocations = set()
for dbsFile in self.dbsFilesToCreate:
# Append a tuple in the format specified by DBSBufferFiles.Add
# Also run insertDatasetAlgo
assocID = None
datasetAlgoPath = '%s:%s:%s:%s:%s:%s:%s:%s' % (
dbsFile['datasetPath'], dbsFile["appName"], dbsFile["appVer"],
dbsFile["appFam"], dbsFile["psetHash"],
dbsFile['processingVer'], dbsFile['acquisitionEra'],
dbsFile['globalTag'])
# First, check if this is in the cache
if datasetAlgoPath in self.datasetAlgoPaths:
for da in self.datasetAlgoID:
if da['datasetAlgoPath'] == datasetAlgoPath:
assocID = da['assocID']
break
if not assocID:
# Then we have to get it ourselves
try:
assocID = dbsFile.insertDatasetAlgo()
self.datasetAlgoPaths.append(datasetAlgoPath)
self.datasetAlgoID.append({
'datasetAlgoPath': datasetAlgoPath,
'assocID': assocID
})
except WMException:
raise
except Exception as ex:
msg = "Unhandled exception while inserting datasetAlgo: %s\n" % datasetAlgoPath
msg += str(ex)
logging.error(msg)
raise AccountantWorkerException(msg)
# Associate the workflow to the file using the taskPath and the requestName
# TODO: debug why it happens and then drop/recover these cases automatically
taskPath = dbsFile.get('task')
if not taskPath:
msg = "Can't do workflow association, report this error to a developer.\n"
msg += "DbsFile : %s" % str(dbsFile)
raise AccountantWorkerException(msg)
workflowName = taskPath.split('/')[1]
workflowPath = '%s:%s' % (workflowName, taskPath)
if workflowPath in self.workflowPaths:
for wf in self.workflowIDs:
if wf['workflowPath'] == workflowPath:
workflowID = wf['workflowID']
break
else:
result = self.dbsGetWorkflow.execute(
workflowName,
taskPath,
conn=self.getDBConn(),
transaction=self.existingTransaction())
workflowID = result['id']
self.workflowPaths.append(workflowPath)
self.workflowIDs.append({
'workflowPath': workflowPath,
'workflowID': workflowID
})
lfn = dbsFile['lfn']
selfChecksums = dbsFile['checksums']
jobLocation = dbsFile.getLocations()[0]
jobLocations.add(jobLocation)
dbsFileTuples.append((lfn, dbsFile['size'], dbsFile['events'],
assocID, dbsFile['status'], workflowID))
dbsFileLoc.append({'lfn': lfn, 'pnn': jobLocation})
if dbsFile['runs']:
runLumiBinds.append({'lfn': lfn, 'runs': dbsFile['runs']})
if selfChecksums:
# If we have checksums we have to create a bind
# For each different checksum
for entry in selfChecksums.keys():
dbsCksumBinds.append({
'lfn': lfn,
'cksum': selfChecksums[entry],
'cktype': entry
})
try:
diffLocation = jobLocations.difference(self.dbsLocations)
for jobLocation in diffLocation:
self.dbsInsertLocation.execute(
siteName=jobLocation,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.dbsLocations.add(jobLocation)
self.dbsCreateFiles.execute(files=dbsFileTuples,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.dbsSetLocation.execute(binds=dbsFileLoc,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.dbsSetChecksum.execute(bulkList=dbsCksumBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
if len(runLumiBinds) > 0:
self.dbsSetRunLumi.execute(
file=runLumiBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Got exception while inserting files into DBSBuffer!\n"
msg += str(ex)
logging.error(msg)
logging.debug("Listing binds:")
logging.debug("jobLocation: %s\n" % jobLocation)
logging.debug("dbsFiles: %s\n" % dbsFileTuples)
logging.debug("dbsFileLoc: %s\n" % dbsFileLoc)
logging.debug("Checksum binds: %s\n" % dbsCksumBinds)
logging.debug("RunLumi binds: %s\n" % runLumiBinds)
raise AccountantWorkerException(msg)
# Now that we've created those files, clear the list
self.dbsFilesToCreate = []
return
def handleWMBSFiles(self, wmbsFilesToBuild, parentageBinds):
"""
_handleWMBSFiles_
Do what can be done in bulk in bulk
"""
if len(wmbsFilesToBuild) == 0:
# Nothing to do
return
runLumiBinds = []
fileCksumBinds = []
fileLocations = []
fileCreate = []
for wmbsFile in wmbsFilesToBuild:
lfn = wmbsFile['lfn']
if lfn == None:
continue
selfChecksums = wmbsFile['checksums']
# by jobType add to different parentage relation
# if it is the merge job, don't include the parentage on failed input files.
# otherwise parentage is set for all input files.
parentageBinds.append({'child': lfn, 'jobid': wmbsFile['jid']})
if wmbsFile['runs']:
runLumiBinds.append({'lfn': lfn, 'runs': wmbsFile['runs']})
if len(wmbsFile.getLocations()) > 0:
outpnn = wmbsFile.getLocations()[0]
if self.pnn_to_psn.get(outpnn, None):
fileLocations.append({'lfn': lfn, 'location': outpnn})
else:
msg = "PNN doesn't exist in wmbs_location_sename table: %s (investigate)" % outpnn
logging.error(msg)
raise AccountantWorkerException(msg)
if selfChecksums:
# If we have checksums we have to create a bind
# For each different checksum
for entry in selfChecksums.keys():
fileCksumBinds.append({
'lfn': lfn,
'cksum': selfChecksums[entry],
'cktype': entry
})
fileCreate.append([
lfn, wmbsFile['size'], wmbsFile['events'], None,
wmbsFile["first_event"], wmbsFile['merged']
])
if len(fileCreate) == 0:
return
try:
self.addFileAction.execute(files=fileCreate,
conn=self.getDBConn(),
transaction=self.existingTransaction())
if runLumiBinds:
self.setFileRunLumi.execute(
file=runLumiBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.setFileAddChecksum.execute(
bulkList=fileCksumBinds,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.setFileLocation.execute(
lfn=fileLocations,
location=self.fileLocation,
conn=self.getDBConn(),
transaction=self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Error while adding files to WMBS!\n"
msg += str(ex)
logging.error(msg)
logging.debug("Printing binds: \n")
logging.debug("FileCreate binds: %s\n" % fileCreate)
logging.debug("Runlumi binds: %s\n" % runLumiBinds)
logging.debug("Checksum binds: %s\n" % fileCksumBinds)
logging.debug("FileLocation binds: %s\n" % fileLocations)
raise AccountantWorkerException(msg)
# Clear out finished files
wmbsFilesToBuild = []
return
def createFileFromDataStructsFile(self, file, jobID):
"""
_createFileFromDataStructsFile_
This function will create a WMBS File given a DataStructs file
"""
wmbsFile = File()
wmbsFile.update(file)
if isinstance(file["locations"], set):
pnn = list(file["locations"])[0]
elif isinstance(file["locations"], list):
if len(file['locations']) > 1:
logging.error(
"Have more then one location for a file in job %i" %
(jobID))
logging.error("Choosing location %s" % (file['locations'][0]))
pnn = file["locations"][0]
else:
pnn = file["locations"]
wmbsFile["locations"] = set()
if pnn != None:
wmbsFile.setLocation(pnn=pnn, immediateSave=False)
wmbsFile['jid'] = jobID
return wmbsFile
def handleDBSBufferParentage(self):
"""
_handleDBSBufferParentage_
Handle all the DBSBuffer Parentage in bulk if you can
"""
outputLFNs = [f['lfn'] for f in self.mergedOutputFiles]
bindList = []
for lfn in outputLFNs:
newParents = self.findDBSParents(lfn=lfn)
for parentLFN in newParents:
bindList.append({'child': lfn, 'parent': parentLFN})
# Now all the parents should exist
# Commit them to DBSBuffer
logging.info("About to commit all DBSBuffer Heritage information")
logging.info(len(bindList))
if len(bindList) > 0:
try:
self.dbsLFNHeritage.execute(
binds=bindList,
conn=self.getDBConn(),
transaction=self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Error while trying to handle the DBS LFN heritage\n"
msg += str(ex)
msg += "BindList: %s" % bindList
logging.error(msg)
raise AccountantWorkerException(msg)
return
def handleSkippedFiles(self):
"""
_handleSkippedFiles_
Handle all the skipped files in bulk,
the way it handles the skipped files
imposes an important restriction:
Skipped files should have been processed by a single job
in the task and no job mask exists in it.
This is suitable for jobs using ParentlessMergeBySize/FileBased/MinFileBased
splitting algorithms.
Here ACDC records and created and the file are moved
to wmbs_sub_files_failed from completed.
"""
jobList = self.getFullJobInfo.execute(
[{
'jobid': x
} for x in self.jobsWithSkippedFiles.keys()],
fileSelection=self.jobsWithSkippedFiles,
conn=self.getDBConn(),
transaction=self.existingTransaction())
self.dataCollection.failedJobs(jobList, useMask=False)
return
class ErrorHandlerPoller(BaseWorkerThread):
"""
Polls for Error Conditions, handles them
"""
def __init__(self, config):
"""
Initialise class members
"""
BaseWorkerThread.__init__(self)
self.config = config
myThread = threading.currentThread()
self.daoFactory = DAOFactory(package = "WMCore.WMBS",
logger = myThread.logger,
dbinterface = myThread.dbi)
self.changeState = ChangeState(self.config)
self.maxRetries = self.config.ErrorHandler.maxRetries
if type(self.maxRetries) != dict:
self.maxRetries = {'default' : self.maxRetries}
if 'default' not in self.maxRetries:
raise ErrorHandlerException('Max retries for the default job type must be specified')
self.maxProcessSize = getattr(self.config.ErrorHandler, 'maxProcessSize', 250)
self.exitCodes = getattr(self.config.ErrorHandler, 'failureExitCodes', [])
self.maxFailTime = getattr(self.config.ErrorHandler, 'maxFailTime', 32 * 3600)
self.readFWJR = getattr(self.config.ErrorHandler, 'readFWJR', False)
self.passCodes = getattr(self.config.ErrorHandler, 'passExitCodes', [])
self.getJobs = self.daoFactory(classname = "Jobs.GetAllJobs")
self.idLoad = self.daoFactory(classname = "Jobs.LoadFromIDWithType")
self.loadAction = self.daoFactory(classname = "Jobs.LoadForErrorHandler")
self.dataCollection = DataCollectionService(url = config.ACDC.couchurl,
database = config.ACDC.database)
# initialize the alert framework (if available - config.Alert present)
# self.sendAlert will be then be available
self.initAlerts(compName = "ErrorHandler")
return
def setup(self, parameters = None):
"""
Load DB objects required for queries
"""
# For now, does nothing
return
def terminate(self, params):
"""
_terminate_
Do one pass, then commit suicide
"""
logging.debug("terminating. doing one more pass before we die")
self.algorithm(params)
def exhaustJobs(self, jobList):
"""
_exhaustJobs_
Actually do the jobs exhaustion
"""
self.changeState.propagate(jobList, 'exhausted', 'retrydone')
# Remove all the files in the exhausted jobs.
logging.debug("About to fail input files for exhausted jobs")
for job in jobList:
job.failInputFiles()
# Do not build ACDC for utilitarian job types
jobList = [ job for job in jobList if job['type'] not in ['LogCollect','Cleanup'] ]
self.handleACDC(jobList)
return
def processRetries(self, jobList, state):
"""
_processRetries_
Actually do the retries
"""
logging.info("Processing retries for %d failed jobs of type %sfailed" % (len(jobList), state))
retrydoneJobs = []
cooloffJobs = []
passJobs = []
# Retries < max retry count
for job in jobList:
allowedRetries = self.maxRetries.get(job['type'], self.maxRetries['default'])
# Retries < allowed max retry count
if job['retry_count'] < allowedRetries and state != 'create':
cooloffJobs.append(job)
# Check if Retries >= allowed max retry count
elif job['retry_count'] >= allowedRetries or state == 'create':
retrydoneJobs.append(job)
msg = "Stopping retries for job %d" % job['id']
logging.debug(msg)
self.sendAlert(4, msg = msg)
logging.debug("JobInfo: %s" % job)
if self.readFWJR:
# Then we have to check each FWJR for exit status
cooloffJobs, passJobs, retrydoneFWJRJobs = self.readFWJRForErrors(cooloffJobs)
retrydoneJobs.extend(retrydoneFWJRJobs)
# Now to actually do something.
logging.debug("About to propagate jobs")
if len(retrydoneJobs) > 0:
self.changeState.propagate(retrydoneJobs, 'retrydone',
'%sfailed' % state, updatesummary = True)
if len(cooloffJobs) > 0:
self.changeState.propagate(cooloffJobs, '%scooloff' % state,
'%sfailed' % state, updatesummary = True)
if len(passJobs) > 0:
# Overwrite the transition states and move directly to created
self.changeState.propagate(passJobs, 'created', 'new')
return
def handleACDC(self, jobList):
"""
_handleACDC_
Do the ACDC creation and hope it works
"""
idList = [x['id'] for x in jobList]
logging.info("Starting to build ACDC with %i jobs" % len(idList))
logging.info("This operation will take some time...")
loadList = self.loadJobsFromListFull(idList)
for job in loadList:
job.getMask()
self.dataCollection.failedJobs(loadList)
return
def readFWJRForErrors(self, jobList):
"""
_readFWJRForErrors_
Check the FWJRs of the failed jobs
and determine those that can be retried
and which must be retried without going through cooloff.
Returns a triplet with cooloff, passed and exhausted jobs.
"""
cooloffJobs = []
passJobs = []
exhaustJobs = []
for job in jobList:
report = Report()
reportPath = job['fwjr_path']
if reportPath is None:
logging.error("No FWJR in job %i, ErrorHandler can't process it.\n Passing it to cooloff." % job['id'])
cooloffJobs.append(job)
continue
if not os.path.isfile(reportPath):
logging.error("Failed to find FWJR for job %i in location %s.\n Passing it to cooloff." % (job['id'], reportPath))
cooloffJobs.append(job)
continue
try:
report.load(reportPath)
# First let's check the time conditions
times = report.getFirstStartLastStop()
startTime = None
stopTime = None
if times is not None:
startTime = times['startTime']
stopTime = times['stopTime']
if startTime == None or stopTime == None:
# We have no information to make a decision, keep going.
logging.debug("No start, stop times for steps for job %i" % job['id'])
elif stopTime - startTime > self.maxFailTime:
msg = "Job %i exhausted after running on node for %i seconds" % (job['id'], stopTime - startTime)
logging.debug(msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.exitCodes]):
msg = "Job %i exhausted due to a bad exit code (%s)" % (job['id'], str(report.getExitCodes()))
logging.error(msg)
self.sendAlert(4, msg = msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.passCodes]):
msg = "Job %i restarted immediately due to an exit code (%s)" % (job['id'], str(report.getExitCodes()))
passJobs.append(job)
continue
cooloffJobs.append(job)
except Exception as ex:
logging.warning("Exception while trying to check jobs for failures!")
logging.warning(str(ex))
logging.warning("Ignoring and sending job to cooloff")
cooloffJobs.append(job)
return cooloffJobs, passJobs, exhaustJobs
def handleRetryDoneJobs(self, jobList):
"""
_handleRetryDoneJobs_
"""
myThread = threading.currentThread()
logging.debug("About to process %d retry done jobs" % len(jobList))
myThread.transaction.begin()
self.exhaustJobs(jobList)
myThread.transaction.commit()
return
def handleFailedJobs(self, jobList, state):
"""
_handleFailedJobs_
"""
myThread = threading.currentThread()
logging.debug("About to process %d failures" % len(jobList))
myThread.transaction.begin()
self.processRetries(jobList, state)
myThread.transaction.commit()
return
def handleErrors(self):
"""
Queries DB for all watched filesets, if matching filesets become
available, create the subscriptions
"""
# Run over created, submitted and executed job failures
failure_states = [ 'create', 'submit', 'job' ]
for state in failure_states:
idList = self.getJobs.execute(state = "%sfailed" % state)
logging.info("Found %d failed jobs in state %sfailed" % (len(idList), state))
while len(idList) > 0:
tmpList = idList[:self.maxProcessSize]
idList = idList[self.maxProcessSize:]
jobList = self.loadJobsFromList(tmpList)
self.handleFailedJobs(jobList, state)
# Run over jobs done with retries
idList = self.getJobs.execute(state = 'retrydone')
logging.info("Found %d jobs done with all retries" % len(idList))
while len(idList) > 0:
tmpList = idList[:self.maxProcessSize]
idList = idList[self.maxProcessSize:]
jobList = self.loadJobsFromList(tmpList)
self.handleRetryDoneJobs(jobList)
return
def loadJobsFromList(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.idLoad.execute(jobID = binds)
# You have to have a list
if type(results) == dict:
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id = entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
def loadJobsFromListFull(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk.
Include the full metadata.
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.loadAction.execute(jobID = binds)
# You have to have a list
if type(results) == dict:
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id = entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
def algorithm(self, parameters = None):
"""
Performs the handleErrors method, looking for each type of failure
And deal with it as desired.
"""
logging.debug("Running error handling algorithm")
myThread = threading.currentThread()
try:
self.handleErrors()
except WMException as ex:
try:
myThread.transaction.rollback()
except:
pass
raise
except CouchConnectionError as ex:
msg = "Caught CouchConnectionError exception in ErrorHandler\n"
msg += "transactions postponed until the next polling cycle\n"
msg += str(ex)
logging.exception(msg)
except Exception as ex:
msg = "Caught exception in ErrorHandler\n"
msg += str(ex)
msg += str(traceback.format_exc())
msg += "\n\n"
logging.error(msg)
self.sendAlert(6, msg = msg)
if getattr(myThread, 'transaction', None) != None \
and getattr(myThread.transaction, 'transaction', None) != None:
myThread.transaction.rollback()
raise ErrorHandlerException(msg)
def testC_ACDCTest(self):
"""
_ACDCTest_
Test whether we can get a goodRunList out of ACDC
and process it correctly.
"""
workload = self.createTestWorkload()
dcs = DataCollectionService(url=self.testInit.couchUrl, database=self.testInit.couchDbName)
testFileA = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileA.addRun(Run(1, 1, 2))
testFileA.create()
testFileB = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileB.addRun(Run(1, 3))
testFileB.create()
testJobA = getJob(workload)
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testFileC = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileC.addRun(Run(1, 4, 6))
testFileC.create()
testJobB = getJob(workload)
testJobB.addFile(testFileC)
testFileD = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileD.addRun(Run(1, 7))
testFileD.create()
testJobC = getJob(workload)
testJobC.addFile(testFileD)
testFileE = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileE.addRun(Run(1, 11, 12))
testFileE.create()
testJobD = getJob(workload)
testJobD.addFile(testFileE)
testFileF = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileF.addRun(Run(2, 5, 6, 7))
testFileF.create()
testJobE = getJob(workload)
testJobE.addFile(testFileF)
testFileG = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileG.addRun(Run(2, 10, 11, 12))
testFileG.create()
testJobF = getJob(workload)
testJobF.addFile(testFileG)
testFileH = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileH.addRun(Run(2, 15))
testFileH.create()
testJobG = getJob(workload)
testJobG.addFile(testFileH)
testFileI = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileI.addRun(Run(3, 20))
testFileI.create()
testJobH = getJob(workload)
testJobH.addFile(testFileI)
testFileJ = File(lfn=makeUUID(), size=1024, events=1024, locations="T1_US_FNAL_Disk")
testFileJ.addRun(Run(1, 9))
testFileJ.create()
testJobI = getJob(workload)
testJobI.addFile(testFileJ)
# dcs.failedJobs([testJobA, testJobB, testJobC, testJobD, testJobE,
# testJobF, testJobG, testJobH, testJobI])
dcs.failedJobs([testJobA, testJobD, testJobH])
baseName = makeUUID()
testFileset = Fileset(name=baseName)
testFileset.create()
testFileset.addFile(testFileA)
testFileset.addFile(testFileB)
testFileset.addFile(testFileC)
testFileset.addFile(testFileD)
testFileset.addFile(testFileE)
testFileset.addFile(testFileF)
testFileset.addFile(testFileG)
testFileset.addFile(testFileH)
testFileset.addFile(testFileI)
testFileset.addFile(testFileJ)
testFileset.commit()
testSubscription = Subscription(fileset=testFileset,
workflow=self.testWorkflow,
split_algo="LumiBased",
type="Processing")
testSubscription.create()
splitter = SplitterFactory()
jobFactory = splitter(package="WMCore.WMBS",
subscription=testSubscription)
jobGroups = jobFactory(lumis_per_job=100,
halt_job_on_file_boundaries=False,
splitOnRun=True,
collectionName=workload.name(),
filesetName=workload.getTask("reco").getPathName(),
owner="evansde77",
group="DMWM",
couchURL=self.testInit.couchUrl,
couchDB=self.testInit.couchDbName,
performance=self.performanceParams)
self.assertEqual(jobGroups[0].jobs[0]['mask'].getRunAndLumis(), {1: [[1, 2], [3, 3], [11, 12]]})
self.assertEqual(jobGroups[0].jobs[1]['mask'].getRunAndLumis(), {3: [[20, 20]]})
return
class AccountantWorker(WMConnectionBase):
"""
Class that actually does the work of parsing FWJRs for the Accountant
Run through ProcessPool
"""
def __init__(self, config):
"""
__init__
Create all DAO objects that are used by this class.
"""
WMConnectionBase.__init__(self, "WMCore.WMBS")
myThread = threading.currentThread()
self.dbsDaoFactory = DAOFactory(package = "WMComponent.DBS3Buffer",
logger = myThread.logger,
dbinterface = myThread.dbi)
self.getOutputMapAction = self.daofactory(classname = "Jobs.GetOutputMap")
self.bulkAddToFilesetAction = self.daofactory(classname = "Fileset.BulkAddByLFN")
self.bulkParentageAction = self.daofactory(classname = "Files.AddBulkParentage")
self.getJobTypeAction = self.daofactory(classname = "Jobs.GetType")
self.getParentInfoAction = self.daofactory(classname = "Files.GetParentInfo")
self.setParentageByJob = self.daofactory(classname = "Files.SetParentageByJob")
self.setParentageByMergeJob = self.daofactory(classname = "Files.SetParentageByMergeJob")
self.setFileRunLumi = self.daofactory(classname = "Files.AddRunLumi")
self.setFileLocation = self.daofactory(classname = "Files.SetLocationByLFN")
self.setFileAddChecksum = self.daofactory(classname = "Files.AddChecksumByLFN")
self.addFileAction = self.daofactory(classname = "Files.Add")
self.jobCompleteInput = self.daofactory(classname = "Jobs.CompleteInput")
self.setBulkOutcome = self.daofactory(classname = "Jobs.SetOutcomeBulk")
self.getWorkflowSpec = self.daofactory(classname = "Workflow.GetSpecAndNameFromTask")
self.getJobInfoByID = self.daofactory(classname = "Jobs.LoadFromID")
self.getFullJobInfo = self.daofactory(classname = "Jobs.LoadForErrorHandler")
self.getJobTaskNameAction = self.daofactory(classname = "Jobs.GetFWJRTaskName")
self.dbsStatusAction = self.dbsDaoFactory(classname = "DBSBufferFiles.SetStatus")
self.dbsParentStatusAction = self.dbsDaoFactory(classname = "DBSBufferFiles.GetParentStatus")
self.dbsChildrenAction = self.dbsDaoFactory(classname = "DBSBufferFiles.GetChildren")
self.dbsCreateFiles = self.dbsDaoFactory(classname = "DBSBufferFiles.Add")
self.dbsSetLocation = self.dbsDaoFactory(classname = "DBSBufferFiles.SetLocationByLFN")
self.dbsInsertLocation = self.dbsDaoFactory(classname = "DBSBufferFiles.AddLocation")
self.dbsSetChecksum = self.dbsDaoFactory(classname = "DBSBufferFiles.AddChecksumByLFN")
self.dbsSetRunLumi = self.dbsDaoFactory(classname = "DBSBufferFiles.AddRunLumi")
self.dbsGetWorkflow = self.dbsDaoFactory(classname = "ListWorkflow")
self.dbsLFNHeritage = self.dbsDaoFactory(classname = "DBSBufferFiles.BulkHeritageParent")
self.stateChanger = ChangeState(config)
# Decide whether or not to attach jobReport to returned value
self.returnJobReport = getattr(config.JobAccountant, 'returnReportFromWorker', False)
# Store location for the specs for DBS
self.specDir = getattr(config.JobAccountant, 'specDir', None)
# ACDC service
self.dataCollection = DataCollectionService(url = config.ACDC.couchurl,
database = config.ACDC.database)
jobDBurl = sanitizeURL(config.JobStateMachine.couchurl)['url']
jobDBName = config.JobStateMachine.couchDBName
jobCouchdb = CouchServer(jobDBurl)
self.fwjrCouchDB = jobCouchdb.connectDatabase("%s/fwjrs" % jobDBName)
self.localWMStats = WMStatsWriter(config.TaskArchiver.localWMStatsURL, appName="WMStatsAgent")
# Hold data for later commital
self.dbsFilesToCreate = []
self.wmbsFilesToBuild = []
self.wmbsMergeFilesToBuild = []
self.fileLocation = None
self.mergedOutputFiles = []
self.listOfJobsToSave = []
self.listOfJobsToFail = []
self.filesetAssoc = []
self.parentageBinds = []
self.parentageBindsForMerge = []
self.jobsWithSkippedFiles = {}
self.count = 0
self.datasetAlgoID = collections.deque(maxlen = 1000)
self.datasetAlgoPaths = collections.deque(maxlen = 1000)
self.dbsLocations = set()
self.workflowIDs = collections.deque(maxlen = 1000)
self.workflowPaths = collections.deque(maxlen = 1000)
self.phedex = PhEDEx()
self.locLists = self.phedex.getNodeMap()
return
def reset(self):
"""
_reset_
Reset all global vars between runs.
"""
self.dbsFilesToCreate = []
self.wmbsFilesToBuild = []
self.wmbsMergeFilesToBuild = []
self.fileLocation = None
self.mergedOutputFiles = []
self.listOfJobsToSave = []
self.listOfJobsToFail = []
self.filesetAssoc = []
self.parentageBinds = []
self.parentageBindsForMerge = []
self.jobsWithSkippedFiles = {}
gc.collect()
return
def loadJobReport(self, parameters):
"""
_loadJobReport_
Given a framework job report on disk, load it and return a
FwkJobReport instance. If there is any problem loading or parsing the
framework job report return None.
"""
# The jobReportPath may be prefixed with "file://" which needs to be
# removed so it doesn't confuse the FwkJobReport() parser.
jobReportPath = parameters.get("fwjr_path", None)
if not jobReportPath:
logging.error("Bad FwkJobReport Path: %s" % jobReportPath)
return self.createMissingFWKJR(parameters, 99999, "FWJR path is empty")
jobReportPath = jobReportPath.replace("file://","")
if not os.path.exists(jobReportPath):
logging.error("Bad FwkJobReport Path: %s" % jobReportPath)
return self.createMissingFWKJR(parameters, 99999, 'Cannot find file in jobReport path: %s' % jobReportPath)
if os.path.getsize(jobReportPath) == 0:
logging.error("Empty FwkJobReport: %s" % jobReportPath)
return self.createMissingFWKJR(parameters, 99998, 'jobReport of size 0: %s ' % jobReportPath)
jobReport = Report()
try:
jobReport.load(jobReportPath)
except Exception as ex:
msg = "Error loading jobReport %s\n" % jobReportPath
msg += str(ex)
logging.error(msg)
logging.debug("Failing job: %s\n" % parameters)
return self.createMissingFWKJR(parameters, 99997, 'Cannot load jobReport')
if len(jobReport.listSteps()) == 0:
logging.error("FwkJobReport with no steps: %s" % jobReportPath)
return self.createMissingFWKJR(parameters, 99997, 'jobReport with no steps: %s ' % jobReportPath)
return jobReport
def isTaskExistInFWJR(self, jobReport, jobStatus):
"""
If taskName is not available in the FWJR, then tries to
recover it getting data from the SQL database.
"""
if not jobReport.getTaskName():
logging.warning("Trying to recover a corrupted FWJR for a %s job with job id %s" % (jobStatus,
jobReport.getJobID()))
jobInfo = self.getJobTaskNameAction.execute(jobId = jobReport.getJobID(),
conn = self.getDBConn(),
transaction = self.existingTransaction())
jobReport.setTaskName(jobInfo['taskName'])
jobReport.save(jobInfo['fwjr_path'])
if not jobReport.getTaskName():
msg = "Report to developers. Failed to recover corrupted fwjr for %s job id %s" % (jobStatus,
jobReport.getJobID())
raise AccountantWorkerException(msg)
else:
logging.info("TaskName '%s' successfully recovered and added to fwjr id %s." % (jobReport.getTaskName(),
jobReport.getJobID()))
return
def __call__(self, parameters):
"""
__call__
Handle a completed job. The parameters dictionary will contain the job
ID and the path to the framework job report.
"""
returnList = []
self.reset()
for job in parameters:
logging.info("Handling %s" % job["fwjr_path"])
# Load the job and set the ID
fwkJobReport = self.loadJobReport(job)
fwkJobReport.setJobID(job['id'])
jobSuccess = self.handleJob(jobID = job["id"],
fwkJobReport = fwkJobReport)
if self.returnJobReport:
returnList.append({'id': job["id"], 'jobSuccess': jobSuccess,
'jobReport': fwkJobReport})
else:
returnList.append({'id': job["id"], 'jobSuccess': jobSuccess})
self.count += 1
self.beginTransaction()
# Now things done at the end of the job
# Do what we can with WMBS files
self.handleWMBSFiles(self.wmbsFilesToBuild, self.parentageBinds)
# handle merge files separately since parentage need to set
# separately to support robust merge
self.handleWMBSFiles(self.wmbsMergeFilesToBuild, self.parentageBindsForMerge)
# Create DBSBufferFiles
self.createFilesInDBSBuffer()
# Handle filesetAssoc
if len(self.filesetAssoc) > 0:
self.bulkAddToFilesetAction.execute(binds = self.filesetAssoc,
conn = self.getDBConn(),
transaction = self.existingTransaction())
# Move successful jobs to successful
if len(self.listOfJobsToSave) > 0:
idList = [x['id'] for x in self.listOfJobsToSave]
outcomeBinds = [{'jobid': x['id'], 'outcome': x['outcome']} for x in self.listOfJobsToSave]
self.setBulkOutcome.execute(binds = outcomeBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.jobCompleteInput.execute(id = idList,
lfnsToSkip = self.jobsWithSkippedFiles,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.stateChanger.propagate(self.listOfJobsToSave, "success", "complete")
# If we have failed jobs, fail them
if len(self.listOfJobsToFail) > 0:
outcomeBinds = [{'jobid': x['id'], 'outcome': x['outcome']} for x in self.listOfJobsToFail]
self.setBulkOutcome.execute(binds = outcomeBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.stateChanger.propagate(self.listOfJobsToFail, "jobfailed", "complete")
# Arrange WMBS parentage
if len(self.parentageBinds) > 0:
self.setParentageByJob.execute(binds = self.parentageBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
if len(self.parentageBindsForMerge) > 0:
self.setParentageByMergeJob.execute(binds = self.parentageBindsForMerge,
conn = self.getDBConn(),
transaction = self.existingTransaction())
# Straighten out DBS Parentage
if len(self.mergedOutputFiles) > 0:
self.handleDBSBufferParentage()
if len(self.jobsWithSkippedFiles) > 0:
self.handleSkippedFiles()
self.commitTransaction(existingTransaction = False)
return returnList
def outputFilesetsForJob(self, outputMap, merged, moduleLabel):
"""
_outputFilesetsForJob_
Determine if the file should be placed in any other fileset. Note that
this will not return the JobGroup output fileset as all jobs will have
their output placed there.
"""
if moduleLabel not in outputMap:
logging.info("Output module label missing from output map.")
return []
outputFilesets = []
for outputFileset in outputMap[moduleLabel]:
if merged == False and outputFileset["output_fileset"] != None:
outputFilesets.append(outputFileset["output_fileset"])
else:
if outputFileset["merged_output_fileset"] != None:
outputFilesets.append(outputFileset["merged_output_fileset"])
return outputFilesets
def addFileToDBS(self, jobReportFile, task):
"""
_addFileToDBS_
Add a file that was output from a job to the DBS buffer.
"""
datasetInfo = jobReportFile["dataset"]
dbsFile = DBSBufferFile(lfn = jobReportFile["lfn"],
size = jobReportFile["size"],
events = jobReportFile["events"],
checksums = jobReportFile["checksums"],
status = "NOTUPLOADED")
dbsFile.setAlgorithm(appName = datasetInfo["applicationName"],
appVer = datasetInfo["applicationVersion"],
appFam = jobReportFile["module_label"],
psetHash = "GIBBERISH",
configContent = jobReportFile.get('configURL'))
dbsFile.setDatasetPath("/%s/%s/%s" % (datasetInfo["primaryDataset"],
datasetInfo["processedDataset"],
datasetInfo["dataTier"]))
dbsFile.setValidStatus(validStatus = jobReportFile.get("validStatus", None))
dbsFile.setProcessingVer(ver = jobReportFile.get('processingVer', None))
dbsFile.setAcquisitionEra(era = jobReportFile.get('acquisitionEra', None))
dbsFile.setGlobalTag(globalTag = jobReportFile.get('globalTag', None))
#TODO need to find where to get the prep id
dbsFile.setPrepID(prep_id = jobReportFile.get('prep_id', None))
dbsFile['task'] = task
for run in jobReportFile["runs"]:
newRun = Run(runNumber = run.run)
newRun.extend(run.lumis)
dbsFile.addRun(newRun)
dbsFile.setLocation(pnn = list(jobReportFile["locations"])[0], immediateSave = False)
self.dbsFilesToCreate.append(dbsFile)
return
def findDBSParents(self, lfn):
"""
_findDBSParents_
Find the parent of the file in DBS
This is meant to be called recursively
"""
parentsInfo = self.getParentInfoAction.execute([lfn],
conn = self.getDBConn(),
transaction = self.existingTransaction())
newParents = set()
for parentInfo in parentsInfo:
# This will catch straight to merge files that do not have redneck
# parents. We will mark the straight to merge file from the job
# as a child of the merged parent.
if int(parentInfo["merged"]) == 1:
newParents.add(parentInfo["lfn"])
elif parentInfo['gpmerged'] == None:
continue
# Handle the files that result from merge jobs that aren't redneck
# children. We have to setup parentage and then check on whether or
# not this file has any redneck children and update their parentage
# information.
elif int(parentInfo["gpmerged"]) == 1:
newParents.add(parentInfo["gplfn"])
# If that didn't work, we've reached the great-grandparents
# And we have to work via recursion
else:
parentSet = self.findDBSParents(lfn = parentInfo['gplfn'])
for parent in parentSet:
newParents.add(parent)
return newParents
def addFileToWMBS(self, jobType, fwjrFile, jobMask, task, jobID = None):
"""
_addFileToWMBS_
Add a file that was produced in a job to WMBS.
"""
fwjrFile["first_event"] = jobMask["FirstEvent"]
if fwjrFile["first_event"] == None:
fwjrFile["first_event"] = 0
if jobType == "Merge" and fwjrFile["module_label"] != "logArchive":
setattr(fwjrFile["fileRef"], 'merged', True)
fwjrFile["merged"] = True
wmbsFile = self.createFileFromDataStructsFile(file = fwjrFile, jobID = jobID)
if jobType == "Merge":
self.wmbsMergeFilesToBuild.append(wmbsFile)
else:
self.wmbsFilesToBuild.append(wmbsFile)
if fwjrFile["merged"]:
self.addFileToDBS(fwjrFile, task)
return wmbsFile
def _mapLocation(self, fwkJobReport):
for file in fwkJobReport.getAllFileRefs():
if file and hasattr(file, 'location'):
file.location = self.phedex.getBestNodeName(file.location, self.locLists)
def handleJob(self, jobID, fwkJobReport):
"""
_handleJob_
Figure out if a job was successful or not, handle it appropriately
(parse FWJR, update WMBS) and return the success status as a boolean
"""
jobSuccess = fwkJobReport.taskSuccessful()
outputMap = self.getOutputMapAction.execute(jobID = jobID,
conn = self.getDBConn(),
transaction = self.existingTransaction())
jobType = self.getJobTypeAction.execute(jobID = jobID,
conn = self.getDBConn(),
transaction = self.existingTransaction())
if jobSuccess:
fileList = fwkJobReport.getAllFiles()
# consistency check comparing outputMap to fileList
# they should match except for some limited special cases
outputModules = set([])
for fwjrFile in fileList:
outputModules.add(fwjrFile['outputModule'])
if set(outputMap.keys()) == outputModules:
pass
elif jobType == "LogCollect" and len(outputMap.keys()) == 0 and outputModules == set(['LogCollect']):
pass
elif jobType == "Merge" and set(outputMap.keys()) == set(['Merged', 'MergedError', 'logArchive']) and outputModules == set(['Merged', 'logArchive']):
pass
elif jobType == "Merge" and set(outputMap.keys()) == set(['Merged', 'MergedError', 'logArchive']) and outputModules == set(['MergedError', 'logArchive']):
pass
elif jobType == "Express" and set(outputMap.keys()).difference(outputModules) == set(['write_RAW']):
pass
else:
failJob = True
if jobType in [ "Processing", "Production" ]:
cmsRunSteps = 0
for step in fwkJobReport.listSteps():
if step.startswith("cmsRun"):
cmsRunSteps += 1
if cmsRunSteps > 1:
failJob = False
if failJob:
jobSuccess = False
logging.error("Job %d , list of expected outputModules does not match job report, failing job", jobID)
logging.debug("Job %d , expected outputModules %s", jobID, sorted(outputMap.keys()))
logging.debug("Job %d , fwjr outputModules %s", jobID, sorted(outputModules))
fileList = fwkJobReport.getAllFilesFromStep(step = 'logArch1')
else:
logging.debug("Job %d , list of expected outputModules does not match job report, accepted for multi-step CMSSW job", jobID)
else:
fileList = fwkJobReport.getAllFilesFromStep(step = 'logArch1')
if jobSuccess:
logging.info("Job %d , handle successful job", jobID)
else:
logging.error("Job %d , bad jobReport, failing job", jobID)
# make sure the task name is present in FWJR (recover from WMBS if needed)
if len(fileList) > 0:
if jobSuccess:
self.isTaskExistInFWJR(fwkJobReport, "success")
else:
self.isTaskExistInFWJR(fwkJobReport, "failed")
# special check for LogCollect jobs
skipLogCollect = False
if jobSuccess and jobType == "LogCollect":
for fwjrFile in fileList:
try:
# this assumes there is only one file for LogCollect jobs, not sure what happend if that changes
self.associateLogCollectToParentJobsInWMStats(fwkJobReport, fwjrFile["lfn"], fwkJobReport.getTaskName())
except Exception as ex:
skipLogCollect = True
logging.error("Error occurred: associating log collect location, will try again\n %s" % str(ex))
break
# now handle the job (unless the special LogCollect check failed)
if not skipLogCollect:
wmbsJob = Job(id = jobID)
wmbsJob.load()
outputID = wmbsJob.loadOutputID()
wmbsJob.getMask()
wmbsJob["fwjr"] = fwkJobReport
if jobSuccess:
wmbsJob["outcome"] = "success"
else:
wmbsJob["outcome"] = "failure"
for fwjrFile in fileList:
logging.debug("Job %d , register output %s", jobID, fwjrFile["lfn"])
wmbsFile = self.addFileToWMBS(jobType, fwjrFile, wmbsJob["mask"],
jobID = jobID, task = fwkJobReport.getTaskName())
merged = fwjrFile['merged']
moduleLabel = fwjrFile["module_label"]
if merged:
self.mergedOutputFiles.append(wmbsFile)
self.filesetAssoc.append({"lfn": wmbsFile["lfn"], "fileset": outputID})
# LogCollect jobs have no output fileset
if jobType != "LogCollect":
outputFilesets = self.outputFilesetsForJob(outputMap, merged, moduleLabel)
for outputFileset in outputFilesets:
self.filesetAssoc.append({"lfn": wmbsFile["lfn"], "fileset": outputFileset})
# Check if the job had any skipped files, put them in ACDC containers
# We assume full file processing (no job masks)
if jobSuccess:
skippedFiles = fwkJobReport.getAllSkippedFiles()
if skippedFiles:
self.jobsWithSkippedFiles[jobID] = skippedFiles
# Only save once job is done, and we're sure we made it through okay
self._mapLocation(wmbsJob['fwjr'])
if jobSuccess:
self.listOfJobsToSave.append(wmbsJob)
else:
self.listOfJobsToFail.append(wmbsJob)
return jobSuccess
def associateLogCollectToParentJobsInWMStats(self, fwkJobReport, logAchiveLFN, task):
"""
_associateLogCollectToParentJobsInWMStats_
Associate a logArchive output to its parent job
"""
inputFileList = fwkJobReport.getAllInputFiles()
requestName = task.split('/')[1]
keys = []
for inputFile in inputFileList:
keys.append([requestName, inputFile["lfn"]])
resultRows = self.fwjrCouchDB.loadView("FWJRDump", 'jobsByOutputLFN',
options = {"stale": "update_after"},
keys = keys)['rows']
if len(resultRows) > 0:
#get data from wmbs
parentWMBSJobIDs = []
for row in resultRows:
parentWMBSJobIDs.append({"jobid": row["value"]})
#update Job doc in wmstats
results = self.getJobInfoByID.execute(parentWMBSJobIDs)
parentJobNames = []
if isinstance(results, list):
for jobInfo in results:
parentJobNames.append(jobInfo['name'])
else:
parentJobNames.append(results['name'])
self.localWMStats.updateLogArchiveLFN(parentJobNames, logAchiveLFN)
else:
#TODO: if the couch db is consistent with DB this should be removed (checking resultRow > 0)
#It need to be failed and retried.
logging.error("job report is missing for updating log archive mapping\n Input file list\n %s" % inputFileList)
return
def createMissingFWKJR(self, parameters, errorCode = 999,
errorDescription = 'Failure of unknown type'):
"""
_createMissingFWJR_
Create a missing FWJR if the report can't be found by the code in the
path location.
"""
report = Report()
report.addError("cmsRun1", 84, errorCode, errorDescription)
report.data.cmsRun1.status = "Failed"
return report
def createFilesInDBSBuffer(self):
"""
_createFilesInDBSBuffer_
It does the actual job of creating things in DBSBuffer
WARNING: This assumes all files in a job have the same final location
"""
if len(self.dbsFilesToCreate) == 0:
# Whoops, nothing to do!
return
dbsFileTuples = []
dbsFileLoc = []
dbsCksumBinds = []
runLumiBinds = []
selfChecksums = None
jobLocations = set()
for dbsFile in self.dbsFilesToCreate:
# Append a tuple in the format specified by DBSBufferFiles.Add
# Also run insertDatasetAlgo
assocID = None
datasetAlgoPath = '%s:%s:%s:%s:%s:%s:%s:%s' % (dbsFile['datasetPath'],
dbsFile["appName"],
dbsFile["appVer"],
dbsFile["appFam"],
dbsFile["psetHash"],
dbsFile['processingVer'],
dbsFile['acquisitionEra'],
dbsFile['globalTag'])
# First, check if this is in the cache
if datasetAlgoPath in self.datasetAlgoPaths:
for da in self.datasetAlgoID:
if da['datasetAlgoPath'] == datasetAlgoPath:
assocID = da['assocID']
break
if not assocID:
# Then we have to get it ourselves
try:
assocID = dbsFile.insertDatasetAlgo()
self.datasetAlgoPaths.append(datasetAlgoPath)
self.datasetAlgoID.append({'datasetAlgoPath': datasetAlgoPath,
'assocID': assocID})
except WMException:
raise
except Exception as ex:
msg = "Unhandled exception while inserting datasetAlgo: %s\n" % datasetAlgoPath
msg += str(ex)
logging.error(msg)
raise AccountantWorkerException(msg)
# Associate the workflow to the file using the taskPath and the requestName
# TODO: debug why it happens and then drop/recover these cases automatically
taskPath = dbsFile.get('task')
if not taskPath:
msg = "Can't do workflow association, report this error to a developer.\n"
msg += "DbsFile : %s" % str(dbsFile)
raise AccountantWorkerException(msg)
workflowName = taskPath.split('/')[1]
workflowPath = '%s:%s' % (workflowName, taskPath)
if workflowPath in self.workflowPaths:
for wf in self.workflowIDs:
if wf['workflowPath'] == workflowPath:
workflowID = wf['workflowID']
break
else:
result = self.dbsGetWorkflow.execute(workflowName, taskPath, conn = self.getDBConn(),
transaction = self.existingTransaction())
workflowID = result['id']
self.workflowPaths.append(workflowPath)
self.workflowIDs.append({'workflowPath': workflowPath, 'workflowID': workflowID})
lfn = dbsFile['lfn']
selfChecksums = dbsFile['checksums']
jobLocation = dbsFile.getLocations()[0]
jobLocations.add(jobLocation)
dbsFileTuples.append((lfn, dbsFile['size'],
dbsFile['events'], assocID,
dbsFile['status'], workflowID))
dbsFileLoc.append({'lfn': lfn, 'sename' : jobLocation})
if dbsFile['runs']:
runLumiBinds.append({'lfn': lfn, 'runs': dbsFile['runs']})
if selfChecksums:
# If we have checksums we have to create a bind
# For each different checksum
for entry in selfChecksums.keys():
dbsCksumBinds.append({'lfn': lfn, 'cksum' : selfChecksums[entry],
'cktype' : entry})
try:
diffLocation = jobLocations.difference(self.dbsLocations)
for jobLocation in diffLocation:
self.dbsInsertLocation.execute(siteName = jobLocation,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.dbsLocations.add(jobLocation)
self.dbsCreateFiles.execute(files = dbsFileTuples,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.dbsSetLocation.execute(binds = dbsFileLoc,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.dbsSetChecksum.execute(bulkList = dbsCksumBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
if len(runLumiBinds) > 0:
self.dbsSetRunLumi.execute(file = runLumiBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Got exception while inserting files into DBSBuffer!\n"
msg += str(ex)
logging.error(msg)
logging.debug("Listing binds:")
logging.debug("jobLocation: %s\n" % jobLocation)
logging.debug("dbsFiles: %s\n" % dbsFileTuples)
logging.debug("dbsFileLoc: %s\n" %dbsFileLoc)
logging.debug("Checksum binds: %s\n" % dbsCksumBinds)
logging.debug("RunLumi binds: %s\n" % runLumiBinds)
raise AccountantWorkerException(msg)
# Now that we've created those files, clear the list
self.dbsFilesToCreate = []
return
def handleWMBSFiles(self, wmbsFilesToBuild, parentageBinds):
"""
_handleWMBSFiles_
Do what can be done in bulk in bulk
"""
if len(wmbsFilesToBuild) == 0:
# Nothing to do
return
runLumiBinds = []
fileCksumBinds = []
fileLocations = []
fileCreate = []
for wmbsFile in wmbsFilesToBuild:
lfn = wmbsFile['lfn']
if lfn == None:
continue
selfChecksums = wmbsFile['checksums']
# by jobType add to different parentage relation
# if it is the merge job, don't include the parentage on failed input files.
# otherwise parentage is set for all input files.
parentageBinds.append({'child': lfn, 'jobid': wmbsFile['jid']})
if wmbsFile['runs']:
runLumiBinds.append({'lfn': lfn, 'runs': wmbsFile['runs']})
if len(wmbsFile.getLocations()) > 0:
fileLocations.append({'lfn': lfn, 'location': wmbsFile.getLocations()[0]})
if selfChecksums:
# If we have checksums we have to create a bind
# For each different checksum
for entry in selfChecksums.keys():
fileCksumBinds.append({'lfn': lfn, 'cksum' : selfChecksums[entry],
'cktype' : entry})
fileCreate.append([lfn,
wmbsFile['size'],
wmbsFile['events'],
None,
wmbsFile["first_event"],
wmbsFile['merged']])
if len(fileCreate) == 0:
return
try:
self.addFileAction.execute(files = fileCreate,
conn = self.getDBConn(),
transaction = self.existingTransaction())
if runLumiBinds:
self.setFileRunLumi.execute(file = runLumiBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.setFileAddChecksum.execute(bulkList = fileCksumBinds,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.setFileLocation.execute(lfn = fileLocations,
location = self.fileLocation,
conn = self.getDBConn(),
transaction = self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Error while adding files to WMBS!\n"
msg += str(ex)
logging.error(msg)
logging.debug("Printing binds: \n")
logging.debug("FileCreate binds: %s\n" % fileCreate)
logging.debug("Runlumi binds: %s\n" % runLumiBinds)
logging.debug("Checksum binds: %s\n" % fileCksumBinds)
logging.debug("FileLocation binds: %s\n" % fileLocations)
raise AccountantWorkerException(msg)
# Clear out finished files
wmbsFilesToBuild = []
return
def createFileFromDataStructsFile(self, file, jobID):
"""
_createFileFromDataStructsFile_
This function will create a WMBS File given a DataStructs file
"""
wmbsFile = File()
wmbsFile.update(file)
if isinstance(file["locations"], set):
pnn = list(file["locations"])[0]
elif isinstance(file["locations"], list):
if len(file['locations']) > 1:
logging.error("Have more then one location for a file in job %i" % (jobID))
logging.error("Choosing location %s" % (file['locations'][0]))
pnn = file["locations"][0]
else:
pnn = file["locations"]
wmbsFile["locations"] = set()
if pnn != None:
wmbsFile.setLocation(pnn = pnn, immediateSave = False)
wmbsFile['jid'] = jobID
return wmbsFile
def handleDBSBufferParentage(self):
"""
_handleDBSBufferParentage_
Handle all the DBSBuffer Parentage in bulk if you can
"""
outputLFNs = [f['lfn'] for f in self.mergedOutputFiles]
bindList = []
for lfn in outputLFNs:
newParents = self.findDBSParents(lfn = lfn)
for parentLFN in newParents:
bindList.append({'child': lfn, 'parent': parentLFN})
# Now all the parents should exist
# Commit them to DBSBuffer
logging.info("About to commit all DBSBuffer Heritage information")
logging.info(len(bindList))
if len(bindList) > 0:
try:
self.dbsLFNHeritage.execute(binds = bindList,
conn = self.getDBConn(),
transaction = self.existingTransaction())
except WMException:
raise
except Exception as ex:
msg = "Error while trying to handle the DBS LFN heritage\n"
msg += str(ex)
msg += "BindList: %s" % bindList
logging.error(msg)
raise AccountantWorkerException(msg)
return
def handleSkippedFiles(self):
"""
_handleSkippedFiles_
Handle all the skipped files in bulk,
the way it handles the skipped files
imposes an important restriction:
Skipped files should have been processed by a single job
in the task and no job mask exists in it.
This is suitable for jobs using ParentlessMergeBySize/FileBased/MinFileBased
splitting algorithms.
Here ACDC records and created and the file are moved
to wmbs_sub_files_failed from completed.
"""
jobList = self.getFullJobInfo.execute([{'jobid' : x} for x in self.jobsWithSkippedFiles.keys()],
fileSelection = self.jobsWithSkippedFiles,
conn = self.getDBConn(),
transaction = self.existingTransaction())
self.dataCollection.failedJobs(jobList, useMask = False)
return
def testChunking(self):
"""
_testChunking_
Insert a workload and files that have several distinct sets of
locations. Verify that the chunks are created correctly and that they
only groups files that have the same set of locations. Also verify that
the chunks are pulled out of ACDC correctly.
"""
dcs = DataCollectionService(url = self.testInit.couchUrl,
database = "wmcore-acdc-datacollectionsvc")
def getJob():
job = Job()
job["task"] = "/ACDCTest/reco"
job["workflow"] = "ACDCTest"
job["location"] = "cmssrm.fnal.gov"
job["owner"] = "cmsdataops"
job["group"] = "cmsdataops"
return job
testFileA = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileA.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileA.addRun(Run(1, 1, 2))
testFileB = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileB.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileB.addRun(Run(1, 3, 4))
testFileC = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileC.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileC.addRun(Run(1, 5, 6))
testJobA = getJob()
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testJobA.addFile(testFileC)
testFileD = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileD.setLocation(["cmssrm.fnal.gov"])
testFileD.addRun(Run(2, 1, 2))
testFileE = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileE.setLocation(["cmssrm.fnal.gov"])
testFileE.addRun(Run(2, 3, 4))
testJobB = getJob()
testJobB.addFile(testFileD)
testJobB.addFile(testFileE)
testFileF = File(lfn = makeUUID(), size = 1024, events = 1024,
parents = set(["/some/parent/F"]))
testFileF.setLocation(["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"])
testFileF.addRun(Run(3, 1, 2))
testFileG = File(lfn = makeUUID(), size = 1024, events = 1024,
parents = set(["/some/parent/G"]))
testFileG.setLocation(["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"] )
testFileG.addRun(Run(3, 3, 4))
testFileH = File(lfn = makeUUID(), size = 1024, events = 1024,
parents = set(["/some/parent/H"]))
testFileH.setLocation(["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"])
testFileH.addRun(Run(3, 5, 6))
testJobC = getJob()
testJobC.addFile(testFileF)
testJobC.addFile(testFileG)
testJobC.addFile(testFileH)
testFileI = File(lfn = makeUUID(), size = 1024, events = 1024, merged = True)
testFileI.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileI.addRun(Run(4, 1, 2))
testFileJ = File(lfn = makeUUID(), size = 1024, events = 1024, merged = True)
testFileJ.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"] )
testFileJ.addRun(Run(4, 3, 4))
testFileK = File(lfn = makeUUID(), size = 1024, events = 1024, merged = True)
testFileK.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileK.addRun(Run(4, 5, 6))
testJobD = getJob()
testJobD.addFile(testFileI)
testJobD.addFile(testFileJ)
testJobD.addFile(testFileK)
dcs.failedJobs([testJobA, testJobB, testJobC, testJobD])
chunks = dcs.chunkFileset("ACDCTest", "/ACDCTest/reco",
chunkSize = 5)
self.assertEqual(len(chunks), 4, "Error: There should be four chunks: %s" % len(chunks))
goldenMetaData = {1: {"lumis": 2, "locations": ["castor.cern.ch", "cmssrm.fnal.gov"], "events": 1024},
2: {"lumis": 4, "locations": ["cmssrm.fnal.gov"], "events": 2048},
3: {"lumis": 6, "locations": ["castor.cern.ch", "cmssrm.fnal.gov", "srm.ral.uk"], "events": 3072},
5: {"lumis": 10, "locations": ["castor.cern.ch", "cmssrm.fnal.gov"], "events": 5120}}
testFiles =[testFileA, testFileB, testFileC, testFileI, testFileJ, testFileK]
lastFile = testFileA
for testFile in testFiles:
if lastFile["lfn"] < testFile["lfn"]:
lastFile = testFile
testFiles.remove(lastFile)
goldenFiles = {1: [lastFile],
2: [testFileD, testFileE],
3: [testFileF, testFileG, testFileH],
5: testFiles}
for chunk in chunks:
chunkMetaData = dcs.getChunkInfo("ACDCTest", "/ACDCTest/reco",
chunk["offset"], chunk["files"])
self.assertEqual(chunkMetaData["files"], chunk["files"],
"Error: Metadata doesn't match.")
self.assertEqual(chunkMetaData["lumis"], chunk["lumis"],
"Error: Metadata doesn't match.")
self.assertEqual(chunkMetaData["events"], chunk["events"],
"Error: Metadata doesn't match.")
self.assertEqual(chunkMetaData["locations"], chunk["locations"],
"Error: Metadata doesn't match.")
self.assertTrue(chunk["files"] in goldenMetaData.keys(),
"Error: Extra chunk found.")
self.assertEqual(chunk["lumis"], goldenMetaData[chunk["files"]]["lumis"],
"Error: Lumis in chunk is wrong.")
self.assertEqual(chunk["locations"], goldenMetaData[chunk["files"]]["locations"],
"Error: Locations in chunk is wrong.")
self.assertEqual(chunk["events"], goldenMetaData[chunk["files"]]["events"],
"Error: Events in chunk is wrong.")
del goldenMetaData[chunk["files"]]
chunkFiles = dcs.getChunkFiles("ACDCTest", "/ACDCTest/reco",
chunk["offset"], chunk["files"])
self.assertTrue(chunk["files"] in goldenFiles.keys(),
"Error: Extra chunk found.")
goldenChunkFiles = goldenFiles[chunk["files"]]
self.assertEqual(len(chunkFiles), len(goldenChunkFiles))
for chunkFile in chunkFiles:
foundFile = None
for goldenChunkFile in goldenChunkFiles:
if chunkFile["lfn"] == goldenChunkFile["lfn"]:
foundFile = goldenChunkFile
break
self.assertTrue(foundFile != None,
"Error: Missing chunk file: %s, %s" % (chunkFiles, goldenChunkFiles))
self.assertEqual(foundFile["parents"], chunkFile["parents"],
"Error: File parents should match.")
self.assertEqual(foundFile["merged"], chunkFile["merged"],
"Error: File merged status should match.")
self.assertEqual(foundFile["locations"], chunkFile["locations"],
"Error: File locations should match.")
self.assertEqual(foundFile["events"], chunkFile["events"],
"Error: File locations should match: %s" % chunk["files"])
self.assertEqual(foundFile["size"], chunkFile["size"],
"Error: File locations should match.")
self.assertEqual(len(foundFile["runs"]), len(chunkFile["runs"]),
"Error: Wrong number of runs.")
for run in foundFile["runs"]:
runMatch = False
for chunkRun in chunkFile["runs"]:
if chunkRun.run == run.run and chunkRun.lumis == run.lumis:
runMatch = True
break
self.assertTrue(runMatch, "Error: Run information is wrong.")
del goldenFiles[chunk["files"]]
singleChunk = dcs.singleChunkFileset("ACDCTest", "/ACDCTest/reco")
self.assertEqual(singleChunk, {"offset" : 0,
"files" : 11,
"events" : 11264,
"lumis" : 22,
"locations" : set(["castor.cern.ch", "cmssrm.fnal.gov", "srm.ral.uk"])},
"Error: Single chunk metadata is wrong")
return
class ErrorHandlerPoller(BaseWorkerThread):
"""
Polls for Error Conditions, handles them
"""
def __init__(self, config):
"""
Initialise class members
"""
BaseWorkerThread.__init__(self)
self.config = config
myThread = threading.currentThread()
self.daoFactory = DAOFactory(package="WMCore.WMBS",
logger=myThread.logger,
dbinterface=myThread.dbi)
self.changeState = ChangeState(self.config)
if hasattr(self.config, "Tier0Feeder"):
self.reqAuxDB = None
self.maxRetries = self.config.ErrorHandler.maxRetries
else:
self.reqAuxDB = ReqMgrAux(self.config.General.ReqMgr2ServiceURL)
self.exitCodesNoRetry = []
self.maxProcessSize = getattr(self.config.ErrorHandler, 'maxProcessSize', 250)
self.maxFailTime = getattr(self.config.ErrorHandler, 'maxFailTime', 32 * 3600)
self.readFWJR = getattr(self.config.ErrorHandler, 'readFWJR', False)
self.passCodes = getattr(self.config.ErrorHandler, 'passExitCodes', [])
self.getJobs = self.daoFactory(classname="Jobs.GetAllJobs")
self.idLoad = self.daoFactory(classname="Jobs.LoadFromIDWithType")
self.loadAction = self.daoFactory(classname="Jobs.LoadForErrorHandler")
self.dataCollection = DataCollectionService(url=config.ACDC.couchurl,
database=config.ACDC.database)
self.setupComponentParam()
return
def setupComponentParam(self):
"""
Initialize (and update every cycle) some of the component's
parameters, according to the agent type (T0/Production) and agent config.
"""
if self.reqAuxDB:
agentConfig = self.reqAuxDB.getWMAgentConfig(self.config.Agent.hostName)
self.exitCodesNoRetry = agentConfig.get("NoRetryExitCodes", [])
if agentConfig.get("UserDrainMode") and agentConfig.get("SpeedDrainMode") \
and agentConfig.get("SpeedDrainConfig")['NoJobRetries']['Enabled']:
logging.info("Agent is in speed drain mode. Not retrying any jobs.")
self.maxRetries = 0
else:
self.maxRetries = agentConfig.get("MaxRetries")
if not isinstance(self.maxRetries, dict):
self.maxRetries = {'default': self.maxRetries}
if 'default' not in self.maxRetries:
raise ErrorHandlerException('Max retries for the default job type must be specified')
def setup(self, parameters=None):
"""
Load DB objects required for queries
"""
# For now, does nothing
return
def terminate(self, params):
"""
_terminate_
Do one pass, then commit suicide
"""
logging.debug("terminating. doing one more pass before we die")
self.algorithm(params)
def exhaustJobs(self, jobList):
"""
_exhaustJobs_
Actually do the jobs exhaustion
"""
# Remove all the files in the exhausted jobs.
logging.debug("About to fail input files for exhausted jobs")
for job in jobList:
job.failInputFiles()
# Do not build ACDC for utilitarian job types
acdcJobList = [job for job in jobList if job['type'] not in ['LogCollect', 'Cleanup']]
self.handleACDC(acdcJobList)
self.changeState.propagate(jobList, 'exhausted', 'retrydone')
return
def processRetries(self, jobList, state):
"""
_processRetries_
Actually do the retries
"""
logging.info("Processing retries for %d failed jobs of type %sfailed", len(jobList), state)
retrydoneJobs = []
cooloffJobs = []
passJobs = []
if not isinstance(self.maxRetries, dict):
self.maxRetries = {'default': self.maxRetries}
if 'default' not in self.maxRetries:
raise ErrorHandlerException('Max retries for the default job type must be specified')
# Retries < max retry count
for job in jobList:
allowedRetries = self.maxRetries.get(job['type'], self.maxRetries['default'])
# Retries < allowed max retry count
if job['retry_count'] < allowedRetries and state != 'create':
cooloffJobs.append(job)
# Check if Retries >= allowed max retry count
elif job['retry_count'] >= allowedRetries or state == 'create':
retrydoneJobs.append(job)
msg = "Stopping retries for job %d" % job['id']
logging.debug(msg)
logging.debug("JobInfo: %s", job)
if self.readFWJR:
# Then we have to check each FWJR for exit status
cooloffJobs, passJobs, retrydoneFWJRJobs = self.readFWJRForErrors(cooloffJobs)
retrydoneJobs.extend(retrydoneFWJRJobs)
# Now to actually do something.
logging.debug("About to propagate jobs")
if len(retrydoneJobs) > 0:
self.changeState.propagate(retrydoneJobs, 'retrydone',
'%sfailed' % state, updatesummary=True)
if len(cooloffJobs) > 0:
self.changeState.propagate(cooloffJobs, '%scooloff' % state,
'%sfailed' % state, updatesummary=True)
if len(passJobs) > 0:
# Overwrite the transition states and move directly to created
self.changeState.propagate(passJobs, 'created', 'new')
return
def handleACDC(self, jobList):
"""
_handleACDC_
Do the ACDC creation and hope it works
"""
idList = [x['id'] for x in jobList]
logging.info("Starting to build ACDC with %i jobs", len(idList))
logging.info("This operation will take some time...")
loadList = self.loadJobsFromListFull(idList)
for job in loadList:
job.getMask()
self.dataCollection.failedJobs(loadList)
return
def readFWJRForErrors(self, jobList):
"""
_readFWJRForErrors_
Check the FWJRs of the failed jobs
and determine those that can be retried
and which must be retried without going through cooloff.
Returns a triplet with cooloff, passed and exhausted jobs.
"""
cooloffJobs = []
passJobs = []
exhaustJobs = []
for job in jobList:
report = Report()
reportPath = job['fwjr_path']
if reportPath is None:
logging.error("No FWJR in job %i, ErrorHandler can't process it.\n Passing it to cooloff.", job['id'])
cooloffJobs.append(job)
continue
if not os.path.isfile(reportPath):
logging.error(
"Failed to find FWJR for job %i in location %s.\n Passing it to cooloff.", job['id'], reportPath)
cooloffJobs.append(job)
continue
try:
report.load(reportPath)
# First let's check the time conditions
times = report.getFirstStartLastStop()
startTime = None
stopTime = None
if times is not None:
startTime = times['startTime']
stopTime = times['stopTime']
# correct the location if the original location is different from recorded in wmbs
# WARNING: we are not updating job location in wmbs only updating in couchdb by doing this.
# If location in wmbs needs to be updated, it should happen in JobAccountant.
locationFromFWJR = report.getSiteName()
if locationFromFWJR:
job["location"] = locationFromFWJR
job["site_cms_name"] = locationFromFWJR
if startTime is None or stopTime is None:
# We have no information to make a decision, keep going.
logging.debug("No start, stop times for steps for job %i", job['id'])
elif stopTime - startTime > self.maxFailTime:
msg = "Job %i exhausted after running on node for %i seconds" % (job['id'], stopTime - startTime)
logging.debug(msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.exitCodesNoRetry]):
msg = "Job %i exhausted due to a bad exit code (%s)" % (job['id'], str(report.getExitCodes()))
logging.debug(msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.passCodes]):
msg = "Job %i restarted immediately due to an exit code (%s)" % (job['id'],
str(report.getExitCodes()))
logging.debug(msg)
passJobs.append(job)
continue
cooloffJobs.append(job)
except Exception as ex:
logging.warning("Exception while trying to check jobs for failures!")
logging.warning(str(ex))
logging.warning("Ignoring and sending job to cooloff")
cooloffJobs.append(job)
return cooloffJobs, passJobs, exhaustJobs
def handleRetryDoneJobs(self, jobList):
"""
_handleRetryDoneJobs_
"""
myThread = threading.currentThread()
logging.info("About to process %d retry done jobs", len(jobList))
myThread.transaction.begin()
self.exhaustJobs(jobList)
myThread.transaction.commit()
return
def handleFailedJobs(self, jobList, state):
"""
_handleFailedJobs_
"""
myThread = threading.currentThread()
logging.info("About to process %d failures", len(jobList))
myThread.transaction.begin()
self.processRetries(jobList, state)
myThread.transaction.commit()
return
def handleErrors(self):
"""
Queries DB for all watched filesets, if matching filesets become
available, create the subscriptions
"""
# Run over created, submitted and executed job failures
failure_states = ['create', 'submit', 'job']
for state in failure_states:
idList = self.getJobs.execute(state="%sfailed" % state)
logging.info("Found %d failed jobs in state %sfailed", len(idList), state)
for jobSlice in grouper(idList, self.maxProcessSize):
jobList = self.loadJobsFromList(jobSlice)
self.handleFailedJobs(jobList, state)
# Run over jobs done with retries
idList = self.getJobs.execute(state='retrydone')
logging.info("Found %d jobs done with all retries", len(idList))
for jobSlice in grouper(idList, self.maxProcessSize):
jobList = self.loadJobsFromList(jobSlice)
self.handleRetryDoneJobs(jobList)
return
def loadJobsFromList(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.idLoad.execute(jobID=binds)
# You have to have a list
if isinstance(results, dict):
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id=entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
def loadJobsFromListFull(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk.
Include the full metadata.
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.loadAction.execute(jobID=binds)
# You have to have a list
if isinstance(results, dict):
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id=entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
@timeFunction
def algorithm(self, parameters=None):
"""
Performs the handleErrors method, looking for each type of failure
And deal with it as desired.
"""
logging.debug("Running error handling algorithm")
self.setupComponentParam()
try:
myThread = threading.currentThread()
self.handleErrors()
except (CouchConnectionError, HTTPException) as ex:
if getattr(myThread, 'transaction', None) is not None:
myThread.transaction.rollback()
msg = "Caught CouchConnectionError/HTTPException exception in ErrorHandler. "
msg += "Transactions postponed until the next polling cycle\n"
msg += str(ex)
logging.error(msg)
except Exception as ex:
if getattr(myThread, 'transaction', None) is not None:
myThread.transaction.rollback()
msg = "Caught unexpected exception in ErrorHandler:\n"
msg += str(ex)
logging.exception(msg)
raise ErrorHandlerException(msg)
def testChunking(self):
"""
_testChunking_
Insert a workload and files that have several distinct sets of
locations. Verify that the chunks are created correctly and that they
only groups files that have the same set of locations. Also verify that
the chunks are pulled out of ACDC correctly.
"""
dcs = DataCollectionService(url=self.testInit.couchUrl,
database="wmcore-acdc-datacollectionsvc")
testFileA = File(lfn=makeUUID(), size=1024, events=1024)
testFileA.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileA.addRun(Run(1, 1, 2))
testFileB = File(lfn=makeUUID(), size=1024, events=1024)
testFileB.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileB.addRun(Run(1, 3, 4))
testFileC = File(lfn=makeUUID(), size=1024, events=1024)
testFileC.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileC.addRun(Run(1, 5, 6))
testJobA = self.getMinimalJob()
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testJobA.addFile(testFileC)
testFileD = File(lfn=makeUUID(), size=1024, events=1024)
testFileD.setLocation(["cmssrm.fnal.gov"])
testFileD.addRun(Run(2, 1, 2))
testFileE = File(lfn=makeUUID(), size=1024, events=1024)
testFileE.setLocation(["cmssrm.fnal.gov"])
testFileE.addRun(Run(2, 3, 4))
testJobB = self.getMinimalJob()
testJobB.addFile(testFileD)
testJobB.addFile(testFileE)
testFileF = File(lfn=makeUUID(),
size=1024,
events=1024,
parents={"/some/parent/F"})
testFileF.setLocation(
["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"])
testFileF.addRun(Run(3, 1, 2))
testFileG = File(lfn=makeUUID(),
size=1024,
events=1024,
parents={"/some/parent/G"})
testFileG.setLocation(
["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"])
testFileG.addRun(Run(3, 3, 4))
testFileH = File(lfn=makeUUID(),
size=1024,
events=1024,
parents={"/some/parent/H"})
testFileH.setLocation(
["cmssrm.fnal.gov", "castor.cern.ch", "srm.ral.uk"])
testFileH.addRun(Run(3, 5, 6))
testJobC = self.getMinimalJob()
testJobC.addFile(testFileF)
testJobC.addFile(testFileG)
testJobC.addFile(testFileH)
testFileI = File(lfn=makeUUID(), size=1024, events=1024, merged=True)
testFileI.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileI.addRun(Run(4, 1, 2))
testFileJ = File(lfn=makeUUID(), size=1024, events=1024, merged=True)
testFileJ.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileJ.addRun(Run(4, 3, 4))
testFileK = File(lfn=makeUUID(), size=1024, events=1024, merged=True)
testFileK.setLocation(["cmssrm.fnal.gov", "castor.cern.ch"])
testFileK.addRun(Run(4, 5, 6))
testJobD = self.getMinimalJob()
testJobD.addFile(testFileI)
testJobD.addFile(testFileJ)
testJobD.addFile(testFileK)
dcs.failedJobs([testJobA, testJobB, testJobC, testJobD])
chunks = dcs.chunkFileset("ACDCTest", "/ACDCTest/reco", chunkSize=5)
self.assertEqual(
len(chunks), 4,
"Error: There should be four chunks: %s" % len(chunks))
goldenMetaData = {
1: {
"lumis": 2,
"locations": ["castor.cern.ch", "cmssrm.fnal.gov"],
"events": 1024
},
2: {
"lumis": 4,
"locations": ["cmssrm.fnal.gov"],
"events": 2048
},
3: {
"lumis": 6,
"locations":
["castor.cern.ch", "cmssrm.fnal.gov", "srm.ral.uk"],
"events": 3072
},
5: {
"lumis": 10,
"locations": ["castor.cern.ch", "cmssrm.fnal.gov"],
"events": 5120
}
}
testFiles = [
testFileA, testFileB, testFileC, testFileI, testFileJ, testFileK
]
lastFile = testFileA
for testFile in testFiles:
if lastFile["lfn"] < testFile["lfn"]:
lastFile = testFile
testFiles.remove(lastFile)
goldenFiles = {
1: [lastFile],
2: [testFileD, testFileE],
3: [testFileF, testFileG, testFileH],
5: testFiles
}
for chunk in chunks:
chunkMetaData = dcs.getChunkInfo("ACDCTest", "/ACDCTest/reco",
chunk["offset"], chunk["files"])
self.assertEqual(chunkMetaData["files"], chunk["files"])
self.assertEqual(chunkMetaData["lumis"], chunk["lumis"])
self.assertEqual(chunkMetaData["events"], chunk["events"])
self.assertEqual(chunkMetaData["locations"], chunk["locations"])
self.assertTrue(chunk["files"] in goldenMetaData.keys(),
"Error: Extra chunk found.")
self.assertEqual(chunk["lumis"],
goldenMetaData[chunk["files"]]["lumis"],
"Error: Lumis in chunk is wrong.")
self.assertEqual(chunk["locations"],
goldenMetaData[chunk["files"]]["locations"],
"Error: Locations in chunk is wrong.")
self.assertEqual(chunk["events"],
goldenMetaData[chunk["files"]]["events"],
"Error: Events in chunk is wrong.")
del goldenMetaData[chunk["files"]]
chunkFiles = dcs.getChunkFiles("ACDCTest", "/ACDCTest/reco",
chunk["offset"], chunk["files"])
self.assertTrue(chunk["files"] in goldenFiles.keys(),
"Error: Extra chunk found.")
goldenChunkFiles = goldenFiles[chunk["files"]]
self.assertEqual(len(chunkFiles), len(goldenChunkFiles))
for chunkFile in chunkFiles:
foundFile = None
for goldenChunkFile in goldenChunkFiles:
if chunkFile["lfn"] == goldenChunkFile["lfn"]:
foundFile = goldenChunkFile
break
self.assertIsNotNone(
foundFile, "Error: Missing chunk file: %s, %s" %
(chunkFiles, goldenChunkFiles))
self.assertEqual(set(foundFile["parents"]),
chunkFile["parents"],
"Error: File parents should match.")
self.assertEqual(foundFile["merged"], chunkFile["merged"],
"Error: File merged status should match.")
self.assertEqual(foundFile["locations"],
chunkFile["locations"],
"Error: File locations should match.")
self.assertEqual(foundFile["events"], chunkFile["events"])
self.assertEqual(foundFile["size"], chunkFile["size"])
self.assertEqual(len(foundFile["runs"]),
len(chunkFile["runs"]),
"Error: Wrong number of runs.")
for run in foundFile["runs"]:
runMatch = False
for chunkRun in chunkFile["runs"]:
if chunkRun.run == run.run and chunkRun.lumis == run.lumis:
runMatch = True
break
self.assertTrue(runMatch,
"Error: Run information is wrong.")
del goldenFiles[chunk["files"]]
singleChunk = dcs.singleChunkFileset("ACDCTest", "/ACDCTest/reco")
self.assertEqual(
singleChunk, {
"offset": 0,
"files": 11,
"events": 11264,
"lumis": 22,
"locations":
{"castor.cern.ch", "cmssrm.fnal.gov", "srm.ral.uk"}
}, "Error: Single chunk metadata is wrong")
return
def testGetLumiWhitelist(self):
"""
_testGetLumiWhitelist_
Verify that the ACDC whitelist generation code works correctly. We'll
add jobs with the following lumi info:
# Run 1, lumis [1, 2, 3], [4, 6], [7], [9], [11, 12]
# Run 2, lumis [5, 6, 7], [10, 11, 12], [15]
# Run 3, lumis [20]
And should get out a whitelist that looks like this:
{"1": [[1, 4], [6, 7], [9, 9], [11, 12]],
"2": [[5, 7], [10, 12], [15, 15]],
"3": [[20, 20]]}
"""
dcs = DataCollectionService(url=self.testInit.couchUrl,
database="wmcore-acdc-datacollectionsvc")
testFileA = File(lfn=makeUUID(), size=1024, events=1024)
testFileA.addRun(Run(1, 1, 2))
testFileB = File(lfn=makeUUID(), size=1024, events=1024)
testFileB.addRun(Run(1, 3))
testJobA = self.getMinimalJob()
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testFileC = File(lfn=makeUUID(), size=1024, events=1024)
testFileC.addRun(Run(1, 4, 6))
testJobB = self.getMinimalJob()
testJobB.addFile(testFileC)
testFileD = File(lfn=makeUUID(), size=1024, events=1024)
testFileD.addRun(Run(1, 7))
testJobC = self.getMinimalJob()
testJobC.addFile(testFileD)
testFileE = File(lfn=makeUUID(), size=1024, events=1024)
testFileE.addRun(Run(1, 11, 12))
testJobD = self.getMinimalJob()
testJobD.addFile(testFileE)
testFileF = File(lfn=makeUUID(), size=1024, events=1024)
testFileF.addRun(Run(2, 5, 6, 7))
testJobE = self.getMinimalJob()
testJobE.addFile(testFileF)
testFileG = File(lfn=makeUUID(), size=1024, events=1024)
testFileG.addRun(Run(2, 10, 11, 12))
testJobF = self.getMinimalJob()
testJobF.addFile(testFileG)
testFileH = File(lfn=makeUUID(), size=1024, events=1024)
testFileH.addRun(Run(2, 15))
testJobG = self.getMinimalJob()
testJobG.addFile(testFileH)
testFileI = File(lfn=makeUUID(), size=1024, events=1024)
testFileI.addRun(Run(3, 20))
testJobH = self.getMinimalJob()
testJobH.addFile(testFileI)
testFileJ = File(lfn=makeUUID(), size=1024, events=1024)
testFileJ.addRun(Run(1, 9))
testJobI = self.getMinimalJob()
testJobI.addFile(testFileJ)
dcs.failedJobs([
testJobA, testJobB, testJobC, testJobD, testJobE, testJobF,
testJobG, testJobH, testJobI
])
whiteList = dcs.getLumiWhitelist("ACDCTest", "/ACDCTest/reco")
self.assertEqual(len(whiteList.keys()), 3,
"Error: There should be 3 runs.")
self.assertEqual(whiteList["1"], [[1, 4], [6, 7], [9, 9], [11, 12]],
"Error: Whitelist for run 1 is wrong.")
self.assertEqual(whiteList["2"], [[5, 7], [10, 12], [15, 15]],
"Error: Whitelist for run 2 is wrong.")
self.assertEqual(whiteList["3"], [[20, 20]],
"Error: Whitelist for run 3 is wrong.")
correctLumiList = LumiList(
compactList={
"1": [[1, 4], [6, 7], [9, 9], [11, 12]],
"2": [[5, 7], [10, 12], [15, 15]],
"3": [[20, 20]]
})
testLumiList = dcs.getLumilistWhitelist("ACDCTest", "/ACDCTest/reco")
self.assertEqual(correctLumiList.getCMSSWString(),
testLumiList.getCMSSWString())
return
class ErrorHandlerPoller(BaseWorkerThread):
"""
Polls for Error Conditions, handles them
"""
def __init__(self, config):
"""
Initialise class members
"""
BaseWorkerThread.__init__(self)
self.config = config
myThread = threading.currentThread()
self.daoFactory = DAOFactory(package = "WMCore.WMBS",
logger = myThread.logger,
dbinterface = myThread.dbi)
self.changeState = ChangeState(self.config)
self.maxRetries = self.config.ErrorHandler.maxRetries
if type(self.maxRetries) != dict:
self.maxRetries = {'default' : self.maxRetries}
if 'default' not in self.maxRetries:
raise ErrorHandlerException('Max retries for the default job type must be specified')
self.maxProcessSize = getattr(self.config.ErrorHandler, 'maxProcessSize', 250)
self.exitCodes = getattr(self.config.ErrorHandler, 'failureExitCodes', [])
self.maxFailTime = getattr(self.config.ErrorHandler, 'maxFailTime', 32 * 3600)
self.readFWJR = getattr(self.config.ErrorHandler, 'readFWJR', False)
self.passCodes = getattr(self.config.ErrorHandler, 'passExitCodes', [])
self.getJobs = self.daoFactory(classname = "Jobs.GetAllJobs")
self.idLoad = self.daoFactory(classname = "Jobs.LoadFromIDWithType")
self.loadAction = self.daoFactory(classname = "Jobs.LoadForErrorHandler")
self.dataCollection = DataCollectionService(url = config.ACDC.couchurl,
database = config.ACDC.database)
# initialize the alert framework (if available - config.Alert present)
# self.sendAlert will be then be available
self.initAlerts(compName = "ErrorHandler")
# Some exit codes imply an immediate failure, non-configurable
self.exitCodes.extend(WMJobPermanentSystemErrors)
return
def setup(self, parameters = None):
"""
Load DB objects required for queries
"""
# For now, does nothing
return
def terminate(self, params):
"""
_terminate_
Do one pass, then commit suicide
"""
logging.debug("terminating. doing one more pass before we die")
self.algorithm(params)
def exhaustJobs(self, jobList):
"""
_exhaustJobs_
Actually do the jobs exhaustion
"""
self.changeState.propagate(jobList, 'exhausted', 'retrydone')
# Remove all the files in the exhausted jobs.
logging.debug("About to fail input files for exhausted jobs")
for job in jobList:
job.failInputFiles()
self.handleACDC(jobList)
return
def processRetries(self, jobList, state):
"""
_processRetries_
Actually do the retries
"""
logging.info("Processing retries for %d failed jobs of type %sfailed" % (len(jobList), state))
retrydoneJobs = []
cooloffJobs = []
passJobs = []
# Retries < max retry count
for job in jobList:
allowedRetries = self.maxRetries.get(job['type'], self.maxRetries['default'])
# Retries < allowed max retry count
if job['retry_count'] < allowedRetries and state != 'create':
cooloffJobs.append(job)
# Check if Retries >= allowed max retry count
elif job['retry_count'] >= allowedRetries or state == 'create':
retrydoneJobs.append(job)
msg = "Stopping retries for job %d" % job['id']
logging.debug(msg)
self.sendAlert(4, msg = msg)
logging.debug("JobInfo: %s" % job)
if self.readFWJR:
# Then we have to check each FWJR for exit status
cooloffJobs, passJobs, retrydoneFWJRJobs = self.readFWJRForErrors(cooloffJobs)
retrydoneJobs.extend(retrydoneFWJRJobs)
# Now to actually do something.
logging.debug("About to propagate jobs")
if len(retrydoneJobs) > 0:
self.changeState.propagate(retrydoneJobs, 'retrydone',
'%sfailed' % state, updatesummary = True)
if len(cooloffJobs) > 0:
self.changeState.propagate(cooloffJobs, '%scooloff' % state,
'%sfailed' % state, updatesummary = True)
if len(passJobs) > 0:
# Overwrite the transition states and move directly to created
self.changeState.propagate(passJobs, 'created', 'new')
return
def handleACDC(self, jobList):
"""
_handleACDC_
Do the ACDC creation and hope it works
"""
idList = [x['id'] for x in jobList]
logging.info("Starting to build ACDC with %i jobs" % len(idList))
logging.info("This operation will take some time...")
loadList = self.loadJobsFromListFull(idList)
for job in loadList:
job.getMask()
self.dataCollection.failedJobs(loadList)
return
def readFWJRForErrors(self, jobList):
"""
_readFWJRForErrors_
Check the FWJRs of the failed jobs
and determine those that can be retried
and which must be retried without going through cooloff.
Returns a triplet with cooloff, passed and exhausted jobs.
"""
cooloffJobs = []
passJobs = []
exhaustJobs = []
for job in jobList:
report = Report()
reportPath = job['fwjr_path']
if reportPath is None:
logging.error("No FWJR in job %i, ErrorHandler can't process it.\n Passing it to cooloff." % job['id'])
cooloffJobs.append(job)
continue
if not os.path.isfile(reportPath):
logging.error("Failed to find FWJR for job %i in location %s.\n Passing it to cooloff." % (job['id'], reportPath))
cooloffJobs.append(job)
continue
try:
report.load(reportPath)
# First let's check the time conditions
times = report.getFirstStartLastStop()
startTime = None
stopTime = None
if times is not None:
startTime = times['startTime']
stopTime = times['stopTime']
if startTime == None or stopTime == None:
# We have no information to make a decision, keep going.
logging.debug("No start, stop times for steps for job %i" % job['id'])
elif stopTime - startTime > self.maxFailTime:
msg = "Job %i exhausted after running on node for %i seconds" % (job['id'], stopTime - startTime)
logging.debug(msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.exitCodes]):
msg = "Job %i exhausted due to a bad exit code (%s)" % (job['id'], str(report.getExitCodes()))
logging.error(msg)
self.sendAlert(4, msg = msg)
exhaustJobs.append(job)
continue
if len([x for x in report.getExitCodes() if x in self.passCodes]):
msg = "Job %i restarted immediately due to an exit code (%s)" % (job['id'], str(report.getExitCodes()))
passJobs.append(job)
continue
cooloffJobs.append(job)
except Exception, ex:
logging.warning("Exception while trying to check jobs for failures!")
logging.warning(str(ex))
logging.warning("Ignoring and sending job to cooloff")
cooloffJobs.append(job)
return cooloffJobs, passJobs, exhaustJobs
class ErrorHandlerPoller(BaseWorkerThread):
"""
Polls for Error Conditions, handles them
"""
def __init__(self, config):
"""
Initialise class members
"""
BaseWorkerThread.__init__(self)
self.config = config
myThread = threading.currentThread()
self.daoFactory = DAOFactory(package = "WMCore.WMBS",
logger = myThread.logger,
dbinterface = myThread.dbi)
self.changeState = ChangeState(self.config)
self.maxRetries = self.config.ErrorHandler.maxRetries
self.maxProcessSize = getattr(self.config.ErrorHandler, 'maxProcessSize', 250)
self.getJobs = self.daoFactory(classname = "Jobs.GetAllJobs")
self.dataCollection = DataCollectionService(url = config.ACDC.couchurl,
database = config.ACDC.database)
# initialize the alert framework (if available - config.Alert present)
# self.sendAlert will be then be available
self.initAlerts(compName = "ErrorHandler")
return
def setup(self, parameters):
"""
Load DB objects required for queries
"""
# For now, does nothing
return
def terminate(self, params):
"""
_terminate_
Do one pass, then commit suicide
"""
logging.debug("terminating. doing one more pass before we die")
self.algorithm(params)
def processRetries(self, jobs, jobType):
"""
Actually do the retries
"""
logging.info("Processing retries for %i failed jobs of type %s." % (len(jobs), jobType))
exhaustJobs = []
cooloffJobs = []
# Retries < max retry count
for ajob in jobs:
# Retries < max retry count
if ajob['retry_count'] < self.maxRetries:
cooloffJobs.append(ajob)
# Check if Retries >= max retry count
elif ajob['retry_count'] >= self.maxRetries:
exhaustJobs.append(ajob)
msg = "Exhausting job %i" % ajob['id']
logging.error(msg)
self.sendAlert(6, msg = msg)
logging.debug("JobInfo: %s" % ajob)
else:
logging.debug("Job %i had %s retries remaining" \
% (ajob['id'], str(ajob['retry_count'])))
#Now to actually do something.
logging.debug("About to propagate jobs")
self.changeState.propagate(exhaustJobs, 'exhausted', \
'%sfailed' %(jobType))
self.changeState.propagate(cooloffJobs, '%scooloff' %(jobType), \
'%sfailed' %(jobType))
# Remove all the files in the exhausted jobs.
logging.debug("About to fail input files for exhausted jobs")
for job in exhaustJobs:
job.failInputFiles()
return exhaustJobs
def handleACDC(self, jobList):
"""
_handleACDC_
Do the ACDC creation and hope it works
"""
logging.debug("Entering ACDC with %i jobs" % len(jobList))
for job in jobList:
job.getMask()
self.dataCollection.failedJobs(jobList)
return
def splitJobList(self, jobList, jobType):
"""
_splitJobList_
Split up list of jobs into more manageable chunks if necessary
"""
if len(jobList) < 1:
# Nothing to do
return
myThread = threading.currentThread()
while len(jobList) > 0:
# Loop over the list and handle it one chunk at a time
tmpList = jobList[:self.maxProcessSize]
jobList = jobList[self.maxProcessSize:]
logging.debug("About to process %i errors" % len(tmpList))
myThread.transaction.begin()
exhaustList = self.processRetries(tmpList, jobType)
self.handleACDC(jobList = exhaustList)
myThread.transaction.commit()
return
def handleErrors(self):
"""
Queries DB for all watched filesets, if matching filesets become
available, create the subscriptions
"""
createList = []
submitList = []
jobList = []
# Run over created jobs
idList = self.getJobs.execute(state = 'CreateFailed')
logging.info("Found %s failed jobs failed during creation" \
% len(idList))
if len(idList) > 0:
createList = self.loadJobsFromList(idList = idList)
# Run over submitted jobs
idList = self.getJobs.execute(state = 'SubmitFailed')
logging.info("Found %s failed jobs failed during submit" \
% len(idList))
if len(idList) > 0:
submitList = self.loadJobsFromList(idList = idList)
# Run over executed jobs
idList = self.getJobs.execute(state = 'JobFailed')
logging.info("Found %s failed jobs failed during execution" \
% len(idList))
if len(idList) > 0:
jobList = self.loadJobsFromList(idList = idList)
self.splitJobList(jobList = createList, jobType = 'create')
self.splitJobList(jobList = submitList, jobType = 'submit')
self.splitJobList(jobList = jobList, jobType = 'job')
return
def loadJobsFromList(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk
"""
loadAction = self.daoFactory(classname = "Jobs.LoadForErrorHandler")
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = loadAction.execute(jobID = binds)
# You have to have a list
if type(results) == dict:
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id = entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
def algorithm(self, parameters = None):
"""
Performs the handleErrors method, looking for each type of failure
And deal with it as desired.
"""
logging.debug("Running error handling algorithm")
myThread = threading.currentThread()
try:
self.handleErrors()
except WMException, ex:
try:
myThread.transaction.rollback()
except:
pass
raise
except Exception, ex:
msg = "Caught exception in ErrorHandler\n"
msg += str(ex)
msg += str(traceback.format_exc())
msg += "\n\n"
logging.error(msg)
self.sendAlert(6, msg = msg)
if getattr(myThread, 'transaction', None) != None \
and getattr(myThread.transaction, 'transaction', None) != None:
myThread.transaction.rollback()
raise ErrorHandlerException(msg)
class ErrorHandlerPoller(BaseWorkerThread):
"""
Polls for Error Conditions, handles them
"""
def __init__(self, config):
"""
Initialise class members
"""
BaseWorkerThread.__init__(self)
self.config = config
myThread = threading.currentThread()
self.daoFactory = DAOFactory(package="WMCore.WMBS",
logger=myThread.logger,
dbinterface=myThread.dbi)
self.changeState = ChangeState(self.config)
self.maxRetries = self.config.ErrorHandler.maxRetries
if not isinstance(self.maxRetries, dict):
self.maxRetries = {'default': self.maxRetries}
if 'default' not in self.maxRetries:
raise ErrorHandlerException(
'Max retries for the default job type must be specified')
self.exitCodesNoRetry = []
self.maxProcessSize = getattr(self.config.ErrorHandler,
'maxProcessSize', 250)
self.maxFailTime = getattr(self.config.ErrorHandler, 'maxFailTime',
32 * 3600)
self.readFWJR = getattr(self.config.ErrorHandler, 'readFWJR', False)
self.passCodes = getattr(self.config.ErrorHandler, 'passExitCodes', [])
self.getJobs = self.daoFactory(classname="Jobs.GetAllJobs")
self.idLoad = self.daoFactory(classname="Jobs.LoadFromIDWithType")
self.loadAction = self.daoFactory(classname="Jobs.LoadForErrorHandler")
self.dataCollection = DataCollectionService(
url=config.ACDC.couchurl, database=config.ACDC.database)
if hasattr(self.config, "Tier0Feeder"):
self.reqAuxDB = None
else:
self.reqAuxDB = ReqMgrAux(self.config.General.ReqMgr2ServiceURL)
return
def setup(self, parameters=None):
"""
Load DB objects required for queries
"""
# For now, does nothing
return
def terminate(self, params):
"""
_terminate_
Do one pass, then commit suicide
"""
logging.debug("terminating. doing one more pass before we die")
self.algorithm(params)
def exhaustJobs(self, jobList):
"""
_exhaustJobs_
Actually do the jobs exhaustion
"""
self.changeState.propagate(jobList, 'exhausted', 'retrydone')
# Remove all the files in the exhausted jobs.
logging.debug("About to fail input files for exhausted jobs")
for job in jobList:
job.failInputFiles()
# Do not build ACDC for utilitarian job types
jobList = [
job for job in jobList
if job['type'] not in ['LogCollect', 'Cleanup']
]
self.handleACDC(jobList)
return
def processRetries(self, jobList, state):
"""
_processRetries_
Actually do the retries
"""
logging.info("Processing retries for %d failed jobs of type %sfailed",
len(jobList), state)
retrydoneJobs = []
cooloffJobs = []
passJobs = []
# Retries < max retry count
for job in jobList:
allowedRetries = self.maxRetries.get(job['type'],
self.maxRetries['default'])
# Retries < allowed max retry count
if job['retry_count'] < allowedRetries and state != 'create':
cooloffJobs.append(job)
# Check if Retries >= allowed max retry count
elif job['retry_count'] >= allowedRetries or state == 'create':
retrydoneJobs.append(job)
msg = "Stopping retries for job %d" % job['id']
logging.debug(msg)
logging.debug("JobInfo: %s", job)
if self.readFWJR:
# Then we have to check each FWJR for exit status
cooloffJobs, passJobs, retrydoneFWJRJobs = self.readFWJRForErrors(
cooloffJobs)
retrydoneJobs.extend(retrydoneFWJRJobs)
# Now to actually do something.
logging.debug("About to propagate jobs")
if len(retrydoneJobs) > 0:
self.changeState.propagate(retrydoneJobs,
'retrydone',
'%sfailed' % state,
updatesummary=True)
if len(cooloffJobs) > 0:
self.changeState.propagate(cooloffJobs,
'%scooloff' % state,
'%sfailed' % state,
updatesummary=True)
if len(passJobs) > 0:
# Overwrite the transition states and move directly to created
self.changeState.propagate(passJobs, 'created', 'new')
return
def handleACDC(self, jobList):
"""
_handleACDC_
Do the ACDC creation and hope it works
"""
idList = [x['id'] for x in jobList]
logging.info("Starting to build ACDC with %i jobs", len(idList))
logging.info("This operation will take some time...")
loadList = self.loadJobsFromListFull(idList)
for job in loadList:
job.getMask()
self.dataCollection.failedJobs(loadList)
return
def readFWJRForErrors(self, jobList):
"""
_readFWJRForErrors_
Check the FWJRs of the failed jobs
and determine those that can be retried
and which must be retried without going through cooloff.
Returns a triplet with cooloff, passed and exhausted jobs.
"""
cooloffJobs = []
passJobs = []
exhaustJobs = []
if self.reqAuxDB:
self.exitCodesNoRetry = self.reqAuxDB.getWMAgentConfig(
self.config.Agent.hostName).get("NoRetryExitCodes", [])
for job in jobList:
report = Report()
reportPath = job['fwjr_path']
if reportPath is None:
logging.error(
"No FWJR in job %i, ErrorHandler can't process it.\n Passing it to cooloff.",
job['id'])
cooloffJobs.append(job)
continue
if not os.path.isfile(reportPath):
logging.error(
"Failed to find FWJR for job %i in location %s.\n Passing it to cooloff.",
job['id'], reportPath)
cooloffJobs.append(job)
continue
try:
report.load(reportPath)
# First let's check the time conditions
times = report.getFirstStartLastStop()
startTime = None
stopTime = None
if times is not None:
startTime = times['startTime']
stopTime = times['stopTime']
# correct the location if the original location is different from recorded in wmbs
# WARNING: we are not updating job location in wmbs only updating in couchdb by doing this.
# If location in wmbs needs to be updated, it should happen in JobAccountant.
locationFromFWJR = report.getSiteName()
if locationFromFWJR:
job["location"] = locationFromFWJR
job["site_cms_name"] = locationFromFWJR
if startTime is None or stopTime is None:
# We have no information to make a decision, keep going.
logging.debug("No start, stop times for steps for job %i",
job['id'])
elif stopTime - startTime > self.maxFailTime:
msg = "Job %i exhausted after running on node for %i seconds" % (
job['id'], stopTime - startTime)
logging.debug(msg)
exhaustJobs.append(job)
continue
if len([
x for x in report.getExitCodes()
if x in self.exitCodesNoRetry
]):
msg = "Job %i exhausted due to a bad exit code (%s)" % (
job['id'], str(report.getExitCodes()))
logging.error(msg)
exhaustJobs.append(job)
continue
if len(
[x for x in report.getExitCodes() if x in self.passCodes]):
msg = "Job %i restarted immediately due to an exit code (%s)" % (
job['id'], str(report.getExitCodes()))
logging.debug(msg)
passJobs.append(job)
continue
cooloffJobs.append(job)
except Exception as ex:
logging.warning(
"Exception while trying to check jobs for failures!")
logging.warning(str(ex))
logging.warning("Ignoring and sending job to cooloff")
cooloffJobs.append(job)
return cooloffJobs, passJobs, exhaustJobs
def handleRetryDoneJobs(self, jobList):
"""
_handleRetryDoneJobs_
"""
myThread = threading.currentThread()
logging.info("About to process %d retry done jobs", len(jobList))
myThread.transaction.begin()
self.exhaustJobs(jobList)
myThread.transaction.commit()
return
def handleFailedJobs(self, jobList, state):
"""
_handleFailedJobs_
"""
myThread = threading.currentThread()
logging.info("About to process %d failures", len(jobList))
myThread.transaction.begin()
self.processRetries(jobList, state)
myThread.transaction.commit()
return
def handleErrors(self):
"""
Queries DB for all watched filesets, if matching filesets become
available, create the subscriptions
"""
# Run over created, submitted and executed job failures
failure_states = ['create', 'submit', 'job']
for state in failure_states:
idList = self.getJobs.execute(state="%sfailed" % state)
logging.info("Found %d failed jobs in state %sfailed", len(idList),
state)
while len(idList) > 0:
tmpList = idList[:self.maxProcessSize]
idList = idList[self.maxProcessSize:]
jobList = self.loadJobsFromList(tmpList)
self.handleFailedJobs(jobList, state)
# Run over jobs done with retries
idList = self.getJobs.execute(state='retrydone')
logging.info("Found %d jobs done with all retries", len(idList))
while len(idList) > 0:
tmpList = idList[:self.maxProcessSize]
idList = idList[self.maxProcessSize:]
jobList = self.loadJobsFromList(tmpList)
self.handleRetryDoneJobs(jobList)
return
def loadJobsFromList(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.idLoad.execute(jobID=binds)
# You have to have a list
if isinstance(results, dict):
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id=entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
def loadJobsFromListFull(self, idList):
"""
_loadJobsFromList_
Load jobs in bulk.
Include the full metadata.
"""
binds = []
for jobID in idList:
binds.append({"jobid": jobID})
results = self.loadAction.execute(jobID=binds)
# You have to have a list
if isinstance(results, dict):
results = [results]
listOfJobs = []
for entry in results:
# One job per entry
tmpJob = Job(id=entry['id'])
tmpJob.update(entry)
listOfJobs.append(tmpJob)
return listOfJobs
@timeFunction
def algorithm(self, parameters=None):
"""
Performs the handleErrors method, looking for each type of failure
And deal with it as desired.
"""
logging.debug("Running error handling algorithm")
try:
myThread = threading.currentThread()
self.handleErrors()
except (CouchConnectionError, HTTPException) as ex:
if getattr(myThread, 'transaction', None) is not None:
myThread.transaction.rollback()
msg = "Caught CouchConnectionError/HTTPException exception in ErrorHandler. "
msg += "Transactions postponed until the next polling cycle\n"
msg += str(ex)
logging.error(msg)
except Exception as ex:
if getattr(myThread, 'transaction', None) is not None:
myThread.transaction.rollback()
msg = "Caught unexpected exception in ErrorHandler:\n"
msg += str(ex)
logging.exception(msg)
raise ErrorHandlerException(msg)
def testGetLumiWhitelist(self):
"""
_testGetLumiWhitelist_
Verify that the ACDC whitelist generation code works correctly. We'll
add jobs with the following lumi info:
# Run 1, lumis [1, 2, 3], [4, 6], [7], [9], [11, 12]
# Run 2, lumis [5, 6, 7], [10, 11, 12], [15]
# Run 3, lumis [20]
And should get out a whitelist that looks like this:
{"1": [[1, 4], [6, 7], [9, 9], [11, 12]],
"2": [[5, 7], [10, 12], [15, 15]],
"3": [[20, 20]]}
"""
dcs = DataCollectionService(url = self.testInit.couchUrl,
database = "wmcore-acdc-datacollectionsvc")
def getJob():
job = Job()
job["task"] = "/ACDCTest/reco"
job["workflow"] = "ACDCTest"
job["location"] = "cmssrm.fnal.gov"
job["owner"] = "cmsdataops"
job["group"] = "cmsdataops"
return job
testFileA = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileA.addRun(Run(1, 1, 2))
testFileB = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileB.addRun(Run(1, 3))
testJobA = getJob()
testJobA.addFile(testFileA)
testJobA.addFile(testFileB)
testFileC = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileC.addRun(Run(1, 4, 6))
testJobB = getJob()
testJobB.addFile(testFileC)
testFileD = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileD.addRun(Run(1, 7))
testJobC = getJob()
testJobC.addFile(testFileD)
testFileE = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileE.addRun(Run(1, 11, 12))
testJobD = getJob()
testJobD.addFile(testFileE)
testFileF = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileF.addRun(Run(2, 5, 6, 7))
testJobE = getJob()
testJobE.addFile(testFileF)
testFileG = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileG.addRun(Run(2, 10, 11, 12))
testJobF = getJob()
testJobF.addFile(testFileG)
testFileH = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileH.addRun(Run(2, 15))
testJobG = getJob()
testJobG.addFile(testFileH)
testFileI = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileI.addRun(Run(3, 20))
testJobH = getJob()
testJobH.addFile(testFileI)
testFileJ = File(lfn = makeUUID(), size = 1024, events = 1024)
testFileJ.addRun(Run(1, 9))
testJobI = getJob()
testJobI.addFile(testFileJ)
dcs.failedJobs([testJobA, testJobB, testJobC, testJobD, testJobE,
testJobF, testJobG, testJobH, testJobI])
whiteList = dcs.getLumiWhitelist("ACDCTest", "/ACDCTest/reco")
self.assertEqual(len(whiteList.keys()), 3,
"Error: There should be 3 runs.")
self.assertEqual(whiteList["1"], [[1, 4], [6, 7], [9, 9], [11, 12]],
"Error: Whitelist for run 1 is wrong.")
self.assertEqual(whiteList["2"], [[5, 7], [10, 12], [15, 15]],
"Error: Whitelist for run 2 is wrong.")
self.assertEqual(whiteList["3"], [[20, 20]],
"Error: Whitelist for run 3 is wrong.")
return
