filename_analysis=filename[:-4]+'_analysis.npz' filename_traces=filename[:-4]+'_traces.npz' #%% load movie m=XMovie(filename, frameRate=frameRate); #%% example plot a frame plt.imshow(m.mov[100],cmap=plt.cm.Greys_r) #%% example play movie m.playMovie(frate=.03,gain=20.0,magnification=4) #%% example take first channel of two channelId=1; totalChannels=2; m.makeSubMov(range(channelId-1,m.mov.shape[0],totalChannels)) #%% prtition into two movies up and down m.crop(crop_top=150,crop_bottom=150,crop_left=150,crop_right=150,crop_begin=0,crop_end=0) #%% concatenate movies (it will add to the original movie) # you have to create another movie new_mov=XMovie(...) m.append(new_mov) #%% motion correct run 3 times # WHEN YOU RUN motion_correct YOUR ARE MODIFYING THE OBJECT!!!! templates=[]; shifts=[];
