Python check_docker_output Examples

Example #1

File: test_cutadapt.py Project: Kraus-Lab/active-enhancers

def test_cutadapt_call():
    out, err = check_docker_output(tool='cutadapt')
    assert 'cutadapt' in out

Example #2

File: test_bwa.py Project: Kraus-Lab/active-enhancers

def test_bwa_call():
    out, err = check_docker_output(tool='bwa')
    assert 'Program: bwa' in out

Example #3

File: test_samtools.py Project: Kraus-Lab/active-enhancers

def test_samtools_call():
    out, err = check_docker_output(tool='samtools')
    assert 'samtools' in out

Example #4

File: test_sratools.py Project: Kraus-Lab/active-enhancers

def test_fastq_dump_call():
    out, err = check_docker_output(tool='fastq-dump')
    assert 'fastq-dump' in out