def main(argv=None):
r"""Main routine for post-processing data from COCO.
Depending on the number of data path input arguments, this routine will:
* call sub-routine :py:func:`bbob_pproc.rungeneric1.main` for each
input arguments; each input argument will be used as output
sub-folder relative to the main output folder,
* call either sub-routines :py:func:`bbob_pproc.rungeneric2.main`
(2 input arguments) or :py:func:`bbob_pproc.rungenericmany.main`
(more than 2) for the input arguments altogether.
The output figures and tables written by default to the output folder
:file:`ppdata` are used in latex templates:
* :file:`template1generic.tex`, :file:`noisytemplate1generic.tex`
for results with a **single** algorithm on the noise-free and noisy
testbeds respectively
* :file:`template2generic.tex`, :file:`noisytemplate2generic.tex`,
for showing the comparison of **2** algorithms
* :file:`template3generic.tex`, :file:`noisytemplate3generic.tex`
for showing the comparison of **more than 2** algorithms.
These latex templates need to be copied in the current working directory
and possibly edited so that the LaTeX commands ``\bbobdatapath`` and
``\algfolder`` point to the correct output folders of the post-processing.
Compiling the template file with LaTeX should then produce a document.
Keyword arguments:
*argv* -- list of strings containing options and arguments. If not
provided, sys.argv is accessed.
*argv* must list folders containing COCO data files. Each of these
folders should correspond to the data of ONE algorithm.
Furthermore, argv can begin with facultative option flags.
-h, --help
displays this message.
-v, --verbose
verbose mode, prints out operations.
-o, --output-dir=OUTPUTDIR
changes the default output directory (:file:`ppdata`) to
:file:`OUTPUTDIR`.
--omit-single
omit calling :py:func:`bbob_pproc.rungeneric1.main`, if
more than one data path argument is provided.
--rld-single-fcts
generate also runlength distribution figures for each
single function. Works only if more than two algorithms are given.
These figures are not (yet) used in the LaTeX templates.
--input-path=INPUTPATH
all folder/file arguments are prepended with the given value
which must be a valid path.
--in-a-hurry
takes values between 0 (default) and 1000, fast processing that
does not write eps files and uses a small number of bootstrap samples
Exceptions raised:
*Usage* -- Gives back a usage message.
Examples:
* Calling the rungeneric.py interface from the command line::
$ python bbob_pproc/rungeneric.py -v AMALGAM BIPOP-CMA-ES
* Loading this package and calling the main from the command line
(requires that the path to this package is in python search path)::
$ python -m bbob_pproc.rungeneric -h
This will print out this help message.
* From the python interpreter (requires that the path to this
package is in python search path)::
>> import bbob_pproc as bb
>> bb.rungeneric.main('-o outputfolder folder1 folder2'.split())
This will execute the post-processing on the data found in
:file:`folder1` and :file:`folder2`. The ``-o`` option changes the
output folder from the default :file:`ppdata` to
:file:`outputfolder`.
"""
if argv is None:
argv = sys.argv[1:]
try:
try:
opts, args = getopt.getopt(
argv, shortoptlist,
longoptlist + ['omit-single', 'in-a-hurry=', 'input-path='])
except getopt.error, msg:
raise Usage(msg)
if not (args):
usage()
sys.exit()
verbose = False
outputdir = 'ppdata'
inputdir = '.'
#Process options
shortoptlist1 = list(
"-" + i.rstrip(":")
for i in _splitshortoptlist(rungeneric1.shortoptlist))
shortoptlist2 = list(
"-" + i.rstrip(":")
for i in _splitshortoptlist(rungeneric2.shortoptlist))
shortoptlistmany = list(
"-" + i.rstrip(":")
for i in _splitshortoptlist(rungenericmany.shortoptlist))
shortoptlist1.remove("-o")
shortoptlist2.remove("-o")
shortoptlistmany.remove("-o")
longoptlist1 = list("--" + i.rstrip("=")
for i in rungeneric1.longoptlist)
longoptlist2 = list("--" + i.rstrip("=")
for i in rungeneric2.longoptlist)
longoptlistmany = list("--" + i.rstrip("=")
for i in rungenericmany.longoptlist)
genopts1 = []
genopts2 = []
genoptsmany = []
for o, a in opts:
if o in ("-h", "--help"):
usage()
sys.exit()
elif o in ("-o", "--output-dir"):
outputdir = a
elif o in ("--in-a-hurry", ):
genericsettings.in_a_hurry = int(a)
elif o in ("--input-path", ):
inputdir = a
else:
isAssigned = False
if o in longoptlist1 or o in shortoptlist1:
genopts1.append(o)
# Append o and then a separately otherwise the list of
# command line arguments might be incorrect
if a:
genopts1.append(a)
isAssigned = True
if o in longoptlist2 or o in shortoptlist2:
genopts2.append(o)
if a:
genopts2.append(a)
isAssigned = True
if o in longoptlistmany or o in shortoptlistmany:
genoptsmany.append(o)
if a:
genoptsmany.append(a)
isAssigned = True
if o in ("-v", "--verbose"):
verbose = True
isAssigned = True
if o in ('--omit-single', '--in-a-hurry'):
isAssigned = True
if not isAssigned:
assert False, "unhandled option"
if (not verbose):
warnings.filterwarnings('module', '.*', UserWarning, '.*')
warnings.simplefilter(
'ignore') # that is bad, but otherwise to many warnings appear
print("Post-processing: will generate output " +
"data in folder %s" % outputdir)
print " this might take several minutes."
if not os.path.exists(outputdir):
os.makedirs(outputdir)
if verbose:
print 'Folder %s was created.' % (outputdir)
truncate_latex_command_file(
os.path.join(outputdir, 'bbob_pproc_commands.tex'))
for i in range(len(args)): # prepend common path inputdir to all names
args[i] = os.path.join(inputdir, args[i])
for i, alg in enumerate(args):
# remove '../' from algorithm output folder
if len(args) == 1 or '--omit-single' not in dict(opts):
tmpoutputdir = os.path.join(
outputdir,
alg.replace('..' + os.sep, '').lstrip(os.sep))
rungeneric1.main(genopts1 + ["-o", tmpoutputdir, alg])
prepend_to_file(
os.path.join(outputdir, 'bbob_pproc_commands.tex'), [
'\\providecommand{\\algfolder}{' +
alg.replace('..' + os.sep, '').rstrip(os.sep).replace(
os.sep, '/') + '/}'
])
if len(args) == 2:
rungeneric2.main(genopts2 + ["-o", outputdir] + args)
elif len(args) > 2:
rungenericmany.main(genoptsmany + ["-o", outputdir] + args)
open(os.path.join(outputdir, 'bbob_pproc_commands.tex'), 'a').close()
print_done()
def main(argv=None):
r"""Main routine for post-processing data from COCO.
Depending on the number of data path input arguments, this routine will:
* call sub-routine :py:func:`bbob_pproc.rungeneric1.main` for each
input arguments; each input argument will be used as output
sub-folder relative to the main output folder,
* call either sub-routines :py:func:`bbob_pproc.rungeneric2.main`
(2 input arguments) or :py:func:`bbob_pproc.rungenericmany.main`
(more than 2) for the input arguments altogether.
The output figures and tables written by default to the output folder
:file:`ppdata` are used in latex templates:
* :file:`template1generic.tex`, :file:`noisytemplate1generic.tex`
for results with a **single** algorithm on the noise-free and noisy
testbeds respectively
* :file:`template2generic.tex`, :file:`noisytemplate2generic.tex`,
for showing the comparison of **2** algorithms
* :file:`template3generic.tex`, :file:`noisytemplate3generic.tex`
for showing the comparison of **more than 2** algorithms.
These latex templates need to be copied in the current working directory
and possibly edited so that the LaTeX commands ``\bbobdatapath`` and
``\algfolder`` point to the correct output folders of the post-processing.
Compiling the template file with LaTeX should then produce a document.
Keyword arguments:
*argv* -- list of strings containing options and arguments. If not
provided, sys.argv is accessed.
*argv* must list folders containing COCO data files. Each of these
folders should correspond to the data of ONE algorithm.
Furthermore, argv can begin with facultative option flags.
-h, --help
displays this message.
-v, --verbose
verbose mode, prints out operations.
-o, --output-dir=OUTPUTDIR
changes the default output directory (:file:`ppdata`) to
:file:`OUTPUTDIR`.
--omit-single
omit calling :py:func:`bbob_pproc.rungeneric1.main`, if
more than one data path argument is provided.
--rld-single-fcts
generate also runlength distribution figures for each
single function. Works only if more than two algorithms are given.
These figures are not (yet) used in the LaTeX templates.
--input-path=INPUTPATH
all folder/file arguments are prepended with the given value
which must be a valid path.
--in-a-hurry
takes values between 0 (default) and 1000, fast processing that
does not write eps files and uses a small number of bootstrap samples
Exceptions raised:
*Usage* -- Gives back a usage message.
Examples:
* Calling the rungeneric.py interface from the command line::
$ python bbob_pproc/rungeneric.py -v AMALGAM BIPOP-CMA-ES
* Loading this package and calling the main from the command line
(requires that the path to this package is in python search path)::
$ python -m bbob_pproc.rungeneric -h
This will print out this help message.
* From the python interpreter (requires that the path to this
package is in python search path)::
>> import bbob_pproc as bb
>> bb.rungeneric.main('-o outputfolder folder1 folder2'.split())
This will execute the post-processing on the data found in
:file:`folder1` and :file:`folder2`. The ``-o`` option changes the
output folder from the default :file:`ppdata` to
:file:`outputfolder`.
"""
if argv is None:
argv = sys.argv[1:]
try:
try:
opts, args = getopt.getopt(argv, shortoptlist, longoptlist + ['omit-single', 'in-a-hurry=', 'input-path='])
except getopt.error, msg:
raise Usage(msg)
if not (args):
usage()
sys.exit()
verbose = False
outputdir = 'ppdata'
inputdir = '.'
#Process options
shortoptlist1 = list("-" + i.rstrip(":")
for i in _splitshortoptlist(rungeneric1.shortoptlist))
shortoptlist2 = list("-" + i.rstrip(":")
for i in _splitshortoptlist(rungeneric2.shortoptlist))
shortoptlistmany = list("-" + i.rstrip(":")
for i in _splitshortoptlist(rungenericmany.shortoptlist))
shortoptlist1.remove("-o")
shortoptlist2.remove("-o")
shortoptlistmany.remove("-o")
longoptlist1 = list( "--" + i.rstrip("=") for i in rungeneric1.longoptlist)
longoptlist2 = list( "--" + i.rstrip("=") for i in rungeneric2.longoptlist)
longoptlistmany = list( "--" + i.rstrip("=") for i in rungenericmany.longoptlist)
genopts1 = []
genopts2 = []
genoptsmany = []
for o, a in opts:
if o in ("-h", "--help"):
usage()
sys.exit()
elif o in ("-o", "--output-dir"):
outputdir = a
elif o in ("--in-a-hurry", ):
genericsettings.in_a_hurry = int(a)
elif o in ("--input-path", ):
inputdir = a
else:
isAssigned = False
if o in longoptlist1 or o in shortoptlist1:
genopts1.append(o)
# Append o and then a separately otherwise the list of
# command line arguments might be incorrect
if a:
genopts1.append(a)
isAssigned = True
if o in longoptlist2 or o in shortoptlist2:
genopts2.append(o)
if a:
genopts2.append(a)
isAssigned = True
if o in longoptlistmany or o in shortoptlistmany:
genoptsmany.append(o)
if a:
genoptsmany.append(a)
isAssigned = True
if o in ("-v","--verbose"):
verbose = True
isAssigned = True
if o in ('--omit-single', '--in-a-hurry'):
isAssigned = True
if not isAssigned:
assert False, "unhandled option"
if (not verbose):
warnings.filterwarnings('module', '.*', UserWarning, '.*')
warnings.simplefilter('ignore') # that is bad, but otherwise to many warnings appear
print ("Post-processing: will generate output " +
"data in folder %s" % outputdir)
print " this might take several minutes."
if not os.path.exists(outputdir):
os.makedirs(outputdir)
if verbose:
print 'Folder %s was created.' % (outputdir)
truncate_latex_command_file(os.path.join(outputdir, 'bbob_pproc_commands.tex'))
for i in range(len(args)): # prepend common path inputdir to all names
args[i] = os.path.join(inputdir, args[i])
for i, alg in enumerate(args):
# remove '../' from algorithm output folder
if len(args) == 1 or '--omit-single' not in dict(opts):
tmpoutputdir = os.path.join(outputdir, alg.replace('..' + os.sep, '').lstrip(os.sep))
rungeneric1.main(genopts1
+ ["-o", tmpoutputdir, alg])
prepend_to_file(os.path.join(outputdir, 'bbob_pproc_commands.tex'),
['\\providecommand{\\algfolder}{' + alg.replace('..' + os.sep, '').rstrip(os.sep).replace(os.sep, '/') + '/}'])
if len(args) == 2:
rungeneric2.main(genopts2 + ["-o", outputdir] + args)
elif len(args) > 2:
rungenericmany.main(genoptsmany + ["-o", outputdir] + args)
open(os.path.join(outputdir, 'bbob_pproc_commands.tex'), 'a').close()
print_done()
