def create_heart_beat_dataset(path, name, group, save_dfile=None): X = load_signal(path=path, name=name, group=group) # 1 record per row rpeaks = load_signal(path=path, name='rpeaks', group=group) signal_to_segment = X['signal'][0,:].T heart_beat, rpeaks = ecg.extract_heartbeats( signal=signal_to_segment, rpeaks=rpeaks['signal'], sampling_rate=1000.0, before=0.2, after=0.4 ) return heart_beat, rpeaks
def extract_beats(data_path): data = loadmat("./ECGTestData/ECGTestData/" + data_path)['data'].T # II导 data = data[1:, :] # 去除第一行index beats_matrix = [] logging.info("--------------------------------------------------") logging.info("载入信号-%s, 长度 = %d " % (data_path, len(data[0]))) min_beats = math.inf for i in DAOLIAN: signal = data[i] fs = 500 # 信号采样率 500 Hz # logging.info("调用 hamilton_segmenter 进行R波检测 ...") # tic = time.time() rpeaks = ecg.hamilton_segmenter(signal, sampling_rate=fs) # toc = time.time() # logging.info("完成. 用时: %f 秒. " % (toc - tic)) rpeaks = rpeaks[0] # heart_rate = 60 / (np.mean(np.diff(rpeaks)) / fs) # np.diff 计算相邻R峰之间的距离分别有多少个采样点,np.mean求平均后,除以采样率, # 将单位转化为秒,然后计算60秒内可以有多少个RR间期作为心率 # logging.info("平均心率: %.3f / 分钟." % (heart_rate)) win_before = 0.2 win_after = 0.4 # logging.info("根据R波位置截取心拍, 心拍前窗口:%.3f 秒 ~ 心拍后窗口:%.3f 秒 ..." % (win_before, win_after)) # rpeak全部落在100处 # tic = time.time() beats, rpeaks_beats = ecg.extract_heartbeats(signal, rpeaks, fs, win_before, win_after) # toc = time.time() # logging.info("完成. 用时: %f 秒." % (toc - tic)) # logging.info("共截取到 %d 个心拍, 每个心拍长度为 %d 个采样点" % (beats.shape[0], beats.shape[1])) # plt.figure() # plt.grid(True) # for i in range(beats.shape[0]): # plt.plot(beats[i]) # plt.title(data_path) # plt.show() beats_matrix.append(beats) if len(beats) < min_beats: min_beats = len(beats) test_data = [] for i in range(min_beats): tdata = [] for j in range(len(DAOLIAN)): rbeats = denoise(beats_matrix[j][i]) tdata.append(rbeats) test_data.append(tdata) test_data = np.array(test_data).flatten().reshape(-1, 300 * len(DAOLIAN), 1) return test_data
def segment_beat(X, tgrid, alg="christov-aligned", grid_len=100, detrend=True): #X = preproc_raw_multi_lead(X, tgrid) if alg == "christov": samp_rate = 1. / (tgrid[1]-tgrid[0]) rpeaks = becg.christov_segmenter(X[0], samp_rate) bmat = np.dstack([ becg.extract_heartbeats(Xr, rpeaks=rpeaks['rpeaks'], sampling_rate=samp_rate, before=.3, after=.4)['templates'] for Xr in X ]) return bmat elif alg == "christov-aligned": # first detect R peaks (using preprocessed first lead) samp_rate = 1. / (tgrid[1]-tgrid[0]) Xfix = preproc_raw(X[0], tgrid)[0] rpeaks = becg.christov_segmenter(Xfix, samp_rate) # then extract irregularly lengthed beats and resample if detrend: Xdet = detrend_raw_multi_lead(X, tgrid) else: Xdet = X # actually extract beats bmat, lens = extract_irregular_beats(Xdet, rpeaks=rpeaks['rpeaks'], grid_len=grid_len) return bmat, lens elif alg == "gen-conv": raise NotImplementedError fit_dict = bcm.fit(X, tgrid, global_params, verbose=True) edbest = fit_dict['elbo_best'] beat_starts = bcm.segment_sparse_zgrid( edbest['pzgrid'], tgrid, edbest['filter_time']) dt = tgrid[1] - tgrid[0] beat_width = np.int(edbest['filter_time'] / dt) beat_idx = np.array([ np.where(bs < tgrid)[0][0] for bs in beat_starts]) templates = [ X[bi:(bi+beat_width)] for bi in beat_idx] lens = np.array([ len(t) for t in templates ]) too_short = lens != np.max(lens) templates = np.row_stack([templates[i] for ts in too_short if not ts]) return templates
def GetRawSamplesFromSignals(dataSignals, sampleRate): allRawSamples = [] for signal in dataSignals: label = signal[0] # Get the label value signal = signal[1:] # Getting rid of the label value rPeaks = ecg.christov_segmenter(signal=signal, sampling_rate=sampleRate) extractions = ecg.extract_heartbeats(signal=signal, rpeaks=rPeaks[0], sampling_rate=sampleRate, before=0.2, after=0.4) heartbeats = extractions['templates'] for heartbeat in heartbeats: heartbeat = np.insert(heartbeat, 0, label) allRawSamples.append(heartbeat) return allRawSamples
def segmentation(data, label=None): inputs, labels = [], [] for sap_id in range(len(data)): data_ref = denoise(copy.copy(data[sap_id][:, 9])) r_peaks = ecg.hamilton_segmenter(data_ref, 500).as_dict()['rpeaks'] beats = np.hstack([ ecg.extract_heartbeats(signal=denoise( copy.copy(data[sap_id][:, dao_id])), rpeaks=r_peaks, sampling_rate=500, before=0.2, after=0.4)["templates"] for dao_id in [1, 3, 6, 9] ]) inputs.append(beats) if label: labels.append(np.full(beats.shape[0], label[sap_id])) # if label: labels.append(label[sap_id]) if not label: return np.array(inputs, dtype=object) else: return np.vstack(inputs), np.hstack(labels)
def calculate_features(signal): sampling_rate = 400 ts, signal, rpeaks, templates_ts, templates, heart_rate_ts, heart_rates = ecg.ecg(signal=signal, sampling_rate=sampling_rate, show=False) rpeaks = ecg.hamilton_segmenter(signal=signal, sampling_rate=sampling_rate)[0] heartbeat_templates, heartbeat_rpeaks = ecg.extract_heartbeats(signal=signal, rpeaks=rpeaks, sampling_rate=sampling_rate) rpeaks_diff = np.diff(rpeaks) rpeaks_diff_diff = np.diff(rpeaks_diff) heartbeat_rpeaks_diff = np.diff(heartbeat_rpeaks) feature = "" mean_amplitude = np.mean(signal) std_amplitude = np.std(signal) max_amplitude = np.amax(signal) min_amplitude = np.amin(signal) median_amplitude = np.median(signal) feature = feature + str(mean_amplitude) + "," + str(std_amplitude) + "," + str(max_amplitude) + "," + str(min_amplitude) + "," + str(median_amplitude) mean_rpeaks_diff = np.mean(rpeaks_diff) std_rpeaks_diff = np.std(rpeaks_diff) median_rpeaks_diff = np.median(rpeaks_diff) feature = feature + "," + str(mean_rpeaks_diff) + "," + str(std_rpeaks_diff) + "," + str(median_rpeaks_diff) mean_rpeaks_diff_diff = np.mean(rpeaks_diff_diff) std_rpeaks_diff_diff = np.std(rpeaks_diff_diff) median_rpeaks_diff_diff = np.median(rpeaks_diff_diff) feature = feature + "," + str(mean_rpeaks_diff_diff) + "," + str(std_rpeaks_diff_diff) + "," + str(median_rpeaks_diff_diff) heartbeat_length = len(heartbeat_templates) mean_heart_rate = np.mean(heart_rates) if len(heart_rates) > 0 else 0.0 std_heart_rate = np.std(heart_rates) if len(heart_rates) > 0 else 0.0 median_heart_rate = np.median(heart_rates) if len(heart_rates) > 0 else 0.0 feature = feature + "," + str(heartbeat_length) + "," + str(mean_heart_rate) + "," + str(std_heart_rate) + "," + str(median_heart_rate) mean_heartbeat_rpeaks_diff = np.mean(heartbeat_rpeaks_diff) std_heartbeat_rpeaks_diff = np.std(heartbeat_rpeaks_diff) median_heartbeat_rpeaks_diff = np.median(heartbeat_rpeaks_diff) feature = feature + "," + str(mean_heartbeat_rpeaks_diff) + "," + str(std_heartbeat_rpeaks_diff) + "," + str(median_heartbeat_rpeaks_diff) return feature
def test_extract_beats(data_path): signal, mdata = load_txt(data_path) logging.info("--------------------------------------------------") logging.info("载入信号-%s, 长度 = %d " % (data_path, len(signal))) fs = 360 # 信号采样率 360 Hz logging.info("调用 hamilton_segmenter 进行R波检测 ...") tic = time.time() rpeaks = ecg.hamilton_segmenter(signal, sampling_rate=fs) toc = time.time() logging.info("完成. 用时: %f 秒. " % (toc - tic)) rpeaks = rpeaks[0] heart_rate = 60 / (np.mean(np.diff(rpeaks)) / fs) # np.diff 计算相邻R峰之间的距离分别有多少个采样点,np.mean求平均后,除以采样率, # 将单位转化为秒,然后计算60秒内可以有多少个RR间期作为心率 logging.info("平均心率: %.3f / 分钟." % (heart_rate)) win_before = 0.2 win_after = 0.4 logging.info("根据R波位置截取心拍, 心拍前窗口:%.3f 秒 ~ 心拍后窗口:%.3f 秒 ..." \ % (win_before, win_after)) tic = time.time() beats, rpeaks_beats = ecg.extract_heartbeats(signal, rpeaks, fs, win_before, win_after) toc = time.time() logging.info("完成. 用时: %f 秒." % (toc - tic)) logging.info("共截取到 %d 个心拍, 每个心拍长度为 %d 个采样点" % \ (beats.shape[0], beats.shape[1])) plt.figure() plt.grid(True) for i in range(beats.shape[0]): plt.plot(beats[i]) plt.title(data_path) plt.show() return
import numpy as np import numpy as np import pandas as pd import matplotlib.pyplot as plt import biosppy.signals.ecg as ecg signal = np.load('one_hb.npy') print('shape of signal: ', signal.shape) ts, filtered, rpeaks, templates_ts, templates, heart_rate_ts, heart_rate = ecg.ecg( signal, sampling_rate=300, show=False) templates, rpeaks_ = ecg.extract_heartbeats(filtered, rpeaks=rpeaks, sampling_rate=300) print('shape templates: ', templates.shape) np.save('one_templates', templates)
def extract_features(ts): """Extract features from individual patient Arguments --------- ts: time series of interest Returns ------- """ """ 1. R-R interval: -what is the average interval between peaks? -how much variation is there in this measure? -max/min value """ # Peak detection: perhaps take it from .ecg function? rpeak0=ecg.hamilton_segmenter(signal=ts,\ sampling_rate=300)[0] # Interval lengths l_RRint = [] for a in range(len(rpeak0)): if (a > 0): l_RRint.append(rpeak0[a] - rpeak0[a - 1]) # Some "robust" extreme values statistics (no max or min) RRint_10, RRint_90 = np.percentile(l_RRint, q=[0.1, 0.9]) RRint_mean = np.mean(l_RRint) RRint_sd = np.std(l_RRint) """ 2. R amplitude (difference between value at peak minus baseline -not "valley"-): -what is the average R amplitude? -how much variation is there in this measure? -max/min value NOTE: YOU CANNOT USE THE INDEXING OF THE R-PEAKS TO FIND THE VALUE OF THE Y! First impression: use ecg.ecg and work with the filtered series (here indeces seem to match) Idea: work with index of filtered series. For baseline take an average of the first and last 20 values of the series """ filtered_ts = ecg.ecg(ts, sampling_rate=300, show=False) hb, hb_peaks= ecg.extract_heartbeats(signal=filtered_ts["filtered"], \ rpeaks= rpeak0, sampling_rate=300.0) # if all(hb[1]==rpeak0): # hb=hb[0] #else: # print "Error" # Finding value at R-peak R_max_value = filtered_ts["filtered"][hb_peaks] # Computing baseline ts_baselines = [] for a_hb in hb: ts_baselines.append((sum(a_hb[0:20])+ \ sum(a_hb[(len(a_hb)-20):(len(a_hb)-1)]))/40.) # R_max -baseline R_amplitude = [] for hb_nr in range(len(hb)): R_amplitude.append(R_max_value[hb_nr] - ts_baselines[hb_nr]) Rampl_10, Rampl_90 = np.percentile(R_amplitude, q=[0.1, 0.9]) Rampl_mean = np.mean(R_amplitude) Rampl_sd = np.std(R_amplitude) """ 3. Q and S (latter optional) amplitude (difference between value at min before R minus baseline): Idea: Examinate the HB. Find out: what is a reasonal nr of steps to look before the R peak to find Q? Baseline (see above) - 25 time steps before R-peak to find Q value (the same for S) --> Note, since the R-peak is sometimes identified at the very beginning of the series, we need the window to be relative to where this index is choice: look at indeces int(2./3*R_index):R_index """ Q_vals = [] Q_amplitude = [] S_vals = [] S_amplitude = [] for hb_nr in range(len(hb)): # Q stats R_index = np.where(hb[hb_nr] == R_max_value[hb_nr])[0][0] Q_min = min(hb[hb_nr][int(2. / 3 * R_index):R_index]) Q_vals.append(Q_min) Q_amplitude.append(ts_baselines[hb_nr] - Q_min) # S stats S_min = min(hb[hb_nr][R_index:(R_index + 25)]) S_vals.append(S_min) S_amplitude.append(ts_baselines[hb_nr] - S_min) # Remark: some values are completely off due to clear errors in the # peak detction algorithm (e.g. heartbeat 34 in 19th individual) Qampl_10, Qampl_90 = np.percentile(Q_amplitude, q=[0.1, 0.9]) Qampl_mean = np.mean(Q_amplitude) Qampl_sd = np.std(Q_amplitude) Sampl_10, Sampl_90 = np.percentile(S_amplitude, q=[0.1, 0.9]) Sampl_mean = np.mean(S_amplitude) Sampl_sd = np.std(S_amplitude) """ 4. QRS duration: Idea: we have the index of Q_min and that of S_min. Difference between the two APPROXIMATES this feature (the way I understand it, I should measure how long it takes, once we have left the "baseline" to fall into the Q-in, to come back to the baseline after the S min) """ QRS_time = [] for hb_nr in range(len(hb)): Q_index = np.where(hb[hb_nr] == Q_vals[hb_nr])[0][0] S_index = np.where(hb[hb_nr] == S_vals[hb_nr])[0][0] QRS_time.append(S_index - Q_index) QRSts_10, QRSts_90 = np.percentile(QRS_time, q=[0.1, 0.9]) QRSts_mean = np.mean(QRS_time) QRSts_sd = np.std(QRS_time) """ 5. Hearth rate variability Idea: extract from the .ecg function """ hr_ts = filtered_ts[ "heart_rate"] # For subjet 2719 no heart rate is computed! Weird... if len(hr_ts) == 0: HR_10, HR_90, HR_mean, HR_sd = [None] * 4 else: HR_10, HR_90 = np.percentile(hr_ts, q=[0.1, 0.9]) HR_mean = np.mean(hr_ts) HR_sd = np.std(hr_ts) """ 5. Wavelet energy Idea: don't understand what this is or how to obtain it """ return RRint_mean, RRint_sd, RRint_10, RRint_90, \ Rampl_mean, Rampl_sd, Rampl_10, Rampl_90, \ Qampl_mean, Qampl_sd, Qampl_10, Qampl_90, \ Sampl_mean, Sampl_sd, Sampl_10, Sampl_90, \ QRSts_mean, QRSts_sd, QRSts_10, QRSts_90, \ HR_mean, HR_sd, HR_10, HR_90
avg_earliness = 0 for idx, raw_testing_ecg in tqdm(enumerate(raw_testing_data)): start = time.time() peaks = ecg.christov_segmenter(signal=raw_testing_ecg[:, 0], sampling_rate = 500)[0] if(len(peaks)<=1): la_peaks = ecg.christov_segmenter(signal=raw_testing_ecg[peaks[0]+500:, 0], sampling_rate = 500)[0] peaks = [(x+500) for x in la_peaks] hb = ecg.extract_heartbeats(signal=raw_testing_ecg, rpeaks=peaks, sampling_rate=500, before=1, after=1) rpeak_list = hb[1] raw_testing_ecg_corresponding_label = raw_testing_label[idx] input_snippet = np.array([hb[0]]) predictions, t = model(input_snippet) end = time.time() run_time += (end - start)
data_train = pd.read_csv('Dropbox/MK/ETH MSc Statistics/Machine Learning/Advanced Machine Learning/exercises/project/task3/X_train.csv') del data_train['id'] rpeaks_init = [] for i in range(0,data_train.shape[0]): rpeaks_init.append(bse.engzee_segmenter(signal=data_train.iloc[i,:].values, sampling_rate=300)) rpeaks_corrected = [] for i in range(0,data_train.shape[0]): rpeaks_corrected.append(bse.correct_rpeaks(signal=data_train.iloc[i,:].values, rpeaks=rpeaks_init[i][0], sampling_rate=300, tol=0.05)) heartbeats = [] for i in range(0,data_train.shape[0]): heartbeats.append(bse.extract_heartbeats(signal=data_train.iloc[i,:].values, rpeaks=rpeaks_corrected[i][0], sampling_rate=300, before=0.2, after=0.4) ) R_peaks = [] for i in range(0,data_train.shape[0]): R = [] for j in range(0,len(heartbeats[i][1])): R.append(heartbeats[i][1][j]) R_peaks.append(np.array(R)) df = pd.DataFrame(R_peaks) df.to_csv('R_train.csv', index=True, header=False) lst = [] for i in range(0,data_train.shape[0]):
def feature_extraction(sample, sampling_rate=300): # Normalize raw signal signal = ecg.st.normalize(sample)['signal'] # ensure numpy signal = np.array(signal) sampling_rate = float(sampling_rate) # filter signal order = int(0.3 * sampling_rate) filtered, _, _ = ecg.st.filter_signal(signal=signal, ftype='FIR', band='bandpass', order=order, frequency=[5, 15], sampling_rate=sampling_rate) # segment rpeaks, = ecg.hamilton_segmenter(signal=filtered, sampling_rate=sampling_rate) # correct R-peak locations rpeaks, = ecg.correct_rpeaks(signal=filtered, rpeaks=rpeaks, sampling_rate=sampling_rate, tol=0.05) templates, rpeaks = ecg.extract_heartbeats(signal=filtered, rpeaks=rpeaks, sampling_rate=sampling_rate, before=0.2, after=0.4) # get time vectors length = len(signal) T = (length - 1) / sampling_rate ts = np.linspace(0, T, length, endpoint=False) # Extract time domain measures rpeaks_time = ts[rpeaks] rr_intervals = extract_rr_intervals(rpeaks_time) rr_diffs = extract_rr_diffs(rr_intervals) bpm = get_bpm(rr_intervals) ibi = np.mean(rr_intervals) sdnn = np.std(rr_intervals) sdsd = np.std(rr_diffs) rmssd = np.sqrt(np.mean(rr_diffs**2)) nn20 = np.sum([rr_diffs > 0.02]) / len(rr_diffs) nn50 = np.sum([rr_diffs > 0.05]) / len(rr_diffs) # QRS qpeaks = find_q_point(filtered, rpeaks) speaks = find_s_point(filtered, rpeaks) # Extract wavelet power power_spectrum = ecg.st.power_spectrum(filtered, 300) frequency = [power_spectrum['freqs'][0], power_spectrum['freqs'][-1]] wavelet_energie = ecg.st.band_power(power_spectrum['freqs'], power_spectrum['power'], frequency)['avg_power'] # Amplitudes qamplitudes = filtered[qpeaks] ramplitudes = filtered[rpeaks] samplitudes = filtered[speaks] # QRS duration qrs_duration = ts[speaks] - ts[qpeaks] qrs_duration_diffs = extract_rr_diffs(qrs_duration) iqrs = np.mean(qrs_duration) sdqrs = np.std(qrs_duration) sdqrsdiffs = np.std(qrs_duration_diffs) rmssqrsdiffs = np.sqrt(np.mean(qrs_duration_diffs**2)) extracted_features = [ bpm, ibi, sdnn, sdsd, rmssd, nn20, nn50, wavelet_energie, iqrs, sdqrs, sdqrsdiffs, rmssqrsdiffs, np.median(qamplitudes), np.min(qamplitudes), np.max(qamplitudes), np.median(ramplitudes), np.min(ramplitudes), np.max(ramplitudes), np.median(samplitudes), np.min(samplitudes), np.max(samplitudes) ] return extracted_features
def run_algo(algorithm: str, sig: numpy.ndarray, freq_sampling: int) -> List[int]: """ run a qrs detector on a signal :param algorithm: name of the qrs detector to use :type algorithm: str :param sig: values of the sampled signal to study :type sig: ndarray :param freq_sampling: value of sampling frequency of the signal :type freq_sampling: int :return: localisations of qrs detections :rtype: list(int) """ detectors = Detectors(freq_sampling) if algorithm == 'Pan-Tompkins-ecg-detector': qrs_detections = detectors.pan_tompkins_detector(sig) elif algorithm == 'Hamilton-ecg-detector': qrs_detections = detectors.hamilton_detector(sig) elif algorithm == 'Christov-ecg-detector': qrs_detections = detectors.christov_detector(sig) elif algorithm == 'Engelse-Zeelenberg-ecg-detector': qrs_detections = detectors.engzee_detector(sig) elif algorithm == 'SWT-ecg-detector': qrs_detections = detectors.swt_detector(sig) elif algorithm == 'Matched-filter-ecg-detector' and freq_sampling == 360: qrs_detections = detectors.matched_filter_detector( sig, 'templates/template_360hz.csv') elif algorithm == 'Matched-filter-ecg-detector' and freq_sampling == 250: qrs_detections = detectors.matched_filter_detector( sig, 'templates/template_250hz.csv') elif algorithm == 'Two-average-ecg-detector': qrs_detections = detectors.two_average_detector(sig) elif algorithm == 'Hamilton-biosppy': qrs_detections = bsp_ecg.ecg(signal=sig, sampling_rate=freq_sampling, show=False)[2] elif algorithm == 'Christov-biosppy': order = int(0.3 * freq_sampling) filtered, _, _ = bsp_tools.filter_signal(signal=sig, ftype='FIR', band='bandpass', order=order, frequency=[3, 45], sampling_rate=freq_sampling) rpeaks, = bsp_ecg.christov_segmenter(signal=filtered, sampling_rate=freq_sampling) rpeaks, = bsp_ecg.correct_rpeaks(signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, tol=0.05) _, qrs_detections = bsp_ecg.extract_heartbeats( signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, before=0.2, after=0.4) elif algorithm == 'Engelse-Zeelenberg-biosppy': order = int(0.3 * freq_sampling) filtered, _, _ = bsp_tools.filter_signal(signal=sig, ftype='FIR', band='bandpass', order=order, frequency=[3, 45], sampling_rate=freq_sampling) rpeaks, = bsp_ecg.engzee_segmenter(signal=filtered, sampling_rate=freq_sampling) rpeaks, = bsp_ecg.correct_rpeaks(signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, tol=0.05) _, qrs_detections = bsp_ecg.extract_heartbeats( signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, before=0.2, after=0.4) elif algorithm == 'Gamboa-biosppy': order = int(0.3 * freq_sampling) filtered, _, _ = bsp_tools.filter_signal(signal=sig, ftype='FIR', band='bandpass', order=order, frequency=[3, 45], sampling_rate=freq_sampling) rpeaks, = bsp_ecg.gamboa_segmenter(signal=filtered, sampling_rate=freq_sampling) rpeaks, = bsp_ecg.correct_rpeaks(signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, tol=0.05) _, qrs_detections = bsp_ecg.extract_heartbeats( signal=filtered, rpeaks=rpeaks, sampling_rate=freq_sampling, before=0.2, after=0.4) elif algorithm == 'mne-ecg': qrs_detections = mne_ecg.qrs_detector(freq_sampling, sig) elif algorithm == 'heartpy': rol_mean = rolling_mean(sig, windowsize=0.75, sample_rate=100.0) qrs_detections = hp_pkdetection.detect_peaks( sig, rol_mean, ma_perc=20, sample_rate=100.0)['peaklist'] elif algorithm == 'gqrs-wfdb': qrs_detections = processing.qrs.gqrs_detect(sig=sig, fs=freq_sampling) elif algorithm == 'xqrs-wfdb': qrs_detections = processing.xqrs_detect(sig=sig, fs=freq_sampling) else: raise ValueError( f'Sorry... unknown algorithm. Please check the list {algorithms_list}' ) cast_qrs_detections = [int(element) for element in qrs_detections] return cast_qrs_detections
def heartbeats(f): signal, fs = filtrar_ler(f) x, ts, filtered, rpeaks, templates_ts, templates, heart_rate_ts, heart_rate = returning_all(f) out = ecg.extract_heartbeats(signal=signal, rpeaks=rpeaks, sampling_rate=fs, before=0.2, after=0.4) return f, out