def cache(action='optimize', scenes='', state=-1, quiet=1, _self=cmd):
'''
DESCRIPTION
"cache" manages storage of precomputed results, such as
molecular surfaces.
USAGE
cache action [, scenes [, state ]]
ARGUMENTS
action = string: enable, disable, read_only, clear, or optimize
scenes = string: a space-separated list of scene names (default: '')
state = integer: state index (default: -1)
EXAMPLES
cache enable
cache optimize
cache optimize, F1 F2 F5
NOTES
"cache optimize" will iterate through the list of scenes provided
(or all defined scenes), compute any missing surfaces, and store
them in the cache for later reuse.
PYMOL API
cmd.cache(string action, string scenes, int state, int quiet)
'''
r = DEFAULT_ERROR
action = cache_action_dict[cache_action_sc.auto_err(
str(action), 'action')]
quiet = int(quiet)
if action == 0: # enable
r = _self.set('cache_mode', 2, quiet=quiet)
elif action == 1: # disable
r = _self.set('cache_mode', 0, quiet=quiet)
elif action == 2: # read_only
r = _self.set('cache_mode', 1, quiet=quiet)
elif action == 3: # clear
r = _self._cache_clear(_self=_self)
elif action == 4: # optimize
r = DEFAULT_SUCCESS
_self._cache_mark(_self=_self)
cur_scene = _self.get('scene_current_name')
cache_max = int(_self.get('cache_max'))
if cache_max > 0:
# allow double memory for an optimized cache
_self.set('cache_max', cache_max * 2)
scenes = str(scenes)
scene_list = string.split(scenes)
cache_mode = int(_self.get('cache_mode'))
_self.set('cache_mode', 2)
if not len(scene_list):
scene_list = _self.get_scene_list()
for scene in scene_list:
scene = string.strip(scene)
if not quiet:
print " cache: optimizing scene '%s'." % scene
cmd.scene(scene, animate=0)
cmd.rebuild()
cmd.refresh()
if len(cur_scene):
cmd.scene(cur_scene, animate=0)
else:
scene_list = _self.get_scene_list()
if len(scene_list):
cmd.scene(scene_list[0], animate=0)
else:
if not quiet:
print " cache: no scenes defined -- optimizing current display."
cmd.rebuild()
cmd.refresh()
usage = _self._cache_purge(-1, _self=_self)
if cache_mode:
_self.set('cache_mode', cache_mode)
else:
_self.set('cache_mode', 2) # hmm... could use 1 here instead.
_self.set('cache_max', cache_max) # restore previous limits
if not quiet:
print " cache: optimization complete (~%0.1f MB)." % (
usage * 4 / 1000000.0)
try:
_self.lock(_self)
finally:
_self.unlock(r, _self)
if _self._raising(r, _self): raise QuietException
return r
def mview(action='store', first=0, last=0, power=0.0,
bias=-1.0, simple=-1, linear=0.0, object='',
wrap=-1, hand=0, window=5, cycles=1, scene='',
cut=0.5, quiet=1, auto=-1, state=0, freeze=0,
_self=cmd):
'''
DESCRIPTION
"mview" stores camera and object matrices for use in movie
interpolation.
USAGE
mview [action [, first [, last [, power [, bias [, simple
[, linear [, object [, wrap [, hand [, window [, cycles [,scene
[, cut [, quiet ]]]]]]]]]]]]]]]
NOTES
This command is not yet fully supported in PyMOL 1.x.
SEE ALSO
mplay, mset, mdo, mclear, mmatrix
'''
r = DEFAULT_ERROR
first = int(first)
last = int(last)
auto = int(auto)
freeze = int(freeze)
if first<0:
first = _self.count_frames() + first + 1
if last == 0:
last = _self.count_frames()
if last<0:
last = _self.count_frames() + last + 1
action = mview_action_dict[mview_action_sc.auto_err(action,'action')]
if (scene==None) or (scene=='auto'):
scene = _self.get("scene_current_name")
scene = str(scene)
if (scene!=''):
cmd.scene(scene,"recall","",animate=0,frame=0)
try:
_self.lock(_self)
r = _cmd.mview(_self._COb,int(action),int(first)-1,int(last)-1,
float(power),float(bias),
int(simple), float(linear),str(object),
int(wrap),int(hand),int(window),int(cycles),
str(scene),float(cut),int(quiet),int(state)-1,0)
if (not freeze and
((auto>0) or ((auto<0) and
(_self.get_setting_int("movie_auto_interpolate")>0)))):
if action in [0,1,7]: # reinterpolate after store, clear, or toggle
_cmd.mview(_self._COb,3,-1,-1,
float(power),float(bias),
int(simple), float(linear),str(object),
int(wrap),int(hand),int(window),int(cycles),
str(scene),float(cut),int(quiet),-1,1)
finally:
_self.unlock(r,_self)
if _self._raising(r,_self): raise pymol.CmdException
return r
def cache(action='optimize', scenes='',state=-1, quiet=1, _self=cmd):
'''
DESCRIPTION
"cache" manages storage of precomputed results, such as
molecular surfaces.
USAGE
cache action [, scenes [, state ]]
ARGUMENTS
action = string: enable, disable, read_only, clear, or optimize
scenes = string: a space-separated list of scene names (default: '')
state = integer: state index (default: -1)
EXAMPLES
cache enable
cache optimize
cache optimize, F1 F2 F5
NOTES
"cache optimize" will iterate through the list of scenes provided
(or all defined scenes), compute any missing surfaces, and store
them in the cache for later reuse.
PYMOL API
cmd.cache(string action, string scenes, int state, int quiet)
'''
r = DEFAULT_ERROR
action = cache_action_dict[cache_action_sc.auto_err(str(action),'action')]
quiet = int(quiet)
if action == 0: # enable
r = _self.set('cache_mode',2,quiet=quiet)
elif action == 1: # disable
r =_self.set('cache_mode',0,quiet=quiet)
elif action == 2: # read_only
r =_self.set('cache_mode',1,quiet=quiet)
elif action == 3: # clear
r =_self._cache_clear(_self=_self)
elif action == 4: # optimize
r = DEFAULT_SUCCESS
_self._cache_mark(_self=_self)
cur_scene = _self.get('scene_current_name')
cache_max = int(_self.get('cache_max'))
if cache_max>0:
# allow double memory for an optimized cache
_self.set('cache_max',cache_max*2)
scenes = str(scenes)
scene_list = string.split(scenes)
cache_mode = int(_self.get('cache_mode'))
_self.set('cache_mode',2)
if not len(scene_list):
scene_list = _self.get_scene_list()
for scene in scene_list:
scene = string.strip(scene)
if not quiet:
print " cache: optimizing scene '%s'."%scene
cmd.scene(scene,animate=0)
cmd.rebuild()
cmd.refresh()
if len(cur_scene):
cmd.scene(cur_scene,animate=0)
else:
scene_list = _self.get_scene_list()
if len(scene_list):
cmd.scene(scene_list[0],animate=0)
else:
if not quiet:
print " cache: no scenes defined -- optimizing current display."
cmd.rebuild()
cmd.refresh()
usage = _self._cache_purge(-1,_self=_self)
if cache_mode:
_self.set('cache_mode',cache_mode)
else:
_self.set('cache_mode',2) # hmm... could use 1 here instead.
_self.set('cache_max',cache_max) # restore previous limits
if not quiet:
print " cache: optimization complete (~%0.1f MB)."%(usage*4/1000000.0)
try:
_self.lock(_self)
finally:
_self.unlock(r,_self)
if _self._raising(r,_self): raise QuietException
return r
def mview(action='store',
first=0,
last=0,
power=0.0,
bias=-1.0,
simple=-1,
linear=0.0,
object='',
wrap=-1,
hand=0,
window=5,
cycles=1,
scene='',
cut=0.5,
quiet=1,
auto=-1,
state=0,
freeze=0,
_self=cmd):
'''
DESCRIPTION
"mview" stores camera and object matrices for use in movie
interpolation.
USAGE
mview [action [, first [, last [, power [, bias [, simple
[, linear [, object [, wrap [, hand [, window [, cycles [,scene
[, cut [, quiet ]]]]]]]]]]]]]]]
NOTES
This command is not yet fully supported in PyMOL 1.x.
SEE ALSO
mplay, mset, mdo, mclear, mmatrix
'''
r = DEFAULT_ERROR
first = int(first)
last = int(last)
auto = int(auto)
freeze = int(freeze)
if first < 0:
first = _self.count_frames() + first + 1
if last == 0:
last = _self.count_frames()
if last < 0:
last = _self.count_frames() + last + 1
action = mview_action_dict[mview_action_sc.auto_err(action, 'action')]
if (scene == None) or (scene == 'auto'):
scene = _self.get("scene_current_name")
scene = str(scene)
if (scene != ''):
cmd.scene(scene, "recall", "", animate=0, frame=0)
try:
_self.lock(_self)
r = _cmd.mview(_self._COb, int(action),
int(first) - 1,
int(last) - 1, float(power), float(bias),
int(simple), float(linear), str(object), int(wrap),
int(hand), int(window), int(cycles), str(scene),
float(cut), int(quiet),
int(state) - 1, 0)
if (not freeze and
((auto > 0) or
((auto < 0) and
(_self.get_setting_int("movie_auto_interpolate") > 0)))):
if action in [0, 1, 7
]: # reinterpolate after store, clear, or toggle
_cmd.mview(_self._COb, 3, -1, -1, float(power),
float(bias), int(simple), float(linear),
str(object), int(wrap), int(hand), int(window),
int(cycles), str(scene), float(cut), int(quiet),
-1, 1)
finally:
_self.unlock(r, _self)
if _self._raising(r, _self): raise pymol.CmdException
return r
