def test_geometric_fba(self, solver):
model = construct_geometric_fba_model()
model.solver = solver
geometric_fba_sol = geometric_fba(model)
expected = Series({'v1': 1.0, 'v2': 0.33, 'v3': 0.33, 'v4': 0.33,
'v5': 1.0}, index=['v1', 'v2', 'v3', 'v4', 'v5'])
assert numpy.allclose(geometric_fba_sol.fluxes, expected, atol=1E-02)
def test_geometric_fba(geometric_fba_model, all_solvers):
"""Test geometric_fba."""
geometric_fba_model.solver = all_solvers
geometric_fba_sol = geometric_fba(geometric_fba_model, processes=1)
expected = Series({'v1': 1.0, 'v2': 0.33, 'v3': 0.33, 'v4': 0.33,
'v5': 1.0}, index=['v1', 'v2', 'v3', 'v4', 'v5'])
assert np.allclose(geometric_fba_sol.fluxes, expected, atol=1E-02)
def test_geometric_fba(geometric_fba_model, all_solvers):
"""Test geometric_fba."""
geometric_fba_model.solver = all_solvers
geometric_fba_sol = geometric_fba(geometric_fba_model)
expected = Series(
{
'v1': 1.0,
'v2': 0.33,
'v3': 0.33,
'v4': 0.33,
'v5': 1.0
},
index=['v1', 'v2', 'v3', 'v4', 'v5'])
assert np.allclose(geometric_fba_sol.fluxes, expected, atol=1E-02)
def test_geometric_fba(self, solver):
model = construct_geometric_fba_model()
model.solver = solver
geometric_fba_sol = geometric_fba(model)
expected = Series(
{
'v1': 1.0,
'v2': 0.33,
'v3': 0.33,
'v4': 0.33,
'v5': 1.0
},
index=['v1', 'v2', 'v3', 'v4', 'v5'])
assert numpy.allclose(geometric_fba_sol.fluxes, expected, atol=1E-02)
def test_geometric_fba(geometric_fba_model, all_solvers):
"""Test geometric_fba."""
geometric_fba_model.solver = all_solvers
geometric_fba_sol = geometric_fba(geometric_fba_model, processes=1)
expected = Series(
{
"v1": 1.0,
"v2": 0.33,
"v3": 0.33,
"v4": 0.33,
"v5": 1.0
},
index=["v1", "v2", "v3", "v4", "v5"],
)
assert np.allclose(geometric_fba_sol.fluxes, expected, atol=1e-02)