def test_query_indexed_seqs_fasta(self):
"""pull out some sequences"""
idx = index_fasta(self.seqs_fasta)
seqs = query_indexed_seqs(['ABC', '123'], idx)
exp = sorted([">ABC 567", "AATTGGCC", ">123", "CCCC"])
obs = sorted(seqs.splitlines())
self.assertEqual(obs, exp)
def test_query_indexed_seqs_fasta(self):
"""pull out some sequences"""
idx = index_fasta(self.seqs_fasta)
seqs = query_indexed_seqs(['ABC','123'], idx)
exp = sorted([">ABC 567","AATTGGCC",">123","CCCC"])
obs = sorted(seqs.splitlines())
self.assertEqual(obs,exp)
def test_index_fasta(self):
"""Index a fasta!"""
res = index_fasta(self.seqs_fasta)
self.assertEqual(res.rsplit('/')[-1], "seqs.fasta.cidx")
def test_index_fasta(self):
"""Index a fasta!"""
res = index_fasta(self.seqs_fasta)
self.assertEqual(res.rsplit('/')[-1], "seqs.fasta.cidx")
