def initialize(self, sim):
''' Fix the dates and store the vaccinations '''
# Handle days
self.start_day = sim.day(self.start_day)
self.end_day = sim.day(self.end_day)
self.days = [self.start_day, self.end_day]
# Process daily data
self.daily_vaccines = process_daily_data(self.daily_vaccines, sim, self.start_day)
# Ensure we have the dose scheduler
flag = True
for intv in sim['interventions']:
if isinstance(intv, dose_scheduler):
flag = False
if flag:
sim['interventions'] += [dose_scheduler()]
# Save
self.orig_rel_trans = sc.dcp(sim.people.rel_trans) # Keep a copy of pre-vaccination transmission
self.orig_symp_prob = sc.dcp(sim.people.symp_prob) # ...and symptom probability
# Initialize vaccine info
self.vaccinations = np.zeros(sim.n, dtype=cvd.default_int)
self.vaccine_take = np.zeros(sim.n, dtype=np.bool)
self.vaccination_dates = [[] for p in range(sim.n)] # Store the dates when people are vaccinated
sim.results['new_doses'] = cvb.Result(name='New Doses', npts=sim['n_days']+1, color='#ff00ff')
self.initialized = True
return
def initialize(self, sim):
''' Fix the dates and number of tests '''
# Handle days
self.start_day = sim.day(self.start_day)
self.end_day = sim.day(self.end_day)
self.days = [self.start_day, self.end_day]
# Process daily data
self.daily_tests = process_daily_data(self.daily_tests, sim,
self.start_day)
self.ili_prev = process_daily_data(self.ili_prev, sim, self.start_day)
self.initialized = True
return
def initialize(self, sim):
'''This is borrowed from interventions.test_prob'''
self.start_day = sim.day(self.start_day)
self.end_day = sim.day(self.end_day)
self.days = [self.start_day, self.end_day]
self.ili_prev = cvi.process_daily_data(self.ili_prev, sim,
self.start_day)
self.initialized = True
return
def initialize(self, sim):
''' Fix the dates '''
self.start_day = sim.day(self.start_day)
self.end_day = sim.day(self.end_day)
self.days = [self.start_day, self.end_day]
self.ili_prev = process_daily_data(self.ili_prev, sim, self.start_day)
self.initialized = True
return