def analyse(root, filename, output_folder): # input dx = 1 dy = 1 dz = 1 # loading print "opening",root,filename imp = Opener().openImage(root, filename) # processing #imp.show() print "processing.." imp = af.convert_to_32bit(imp) imp = af.blur_3D_gauss(imp,dx,dy,dz) imp_max = af.project_z(imp, "max") imp_sum = af.project_z(imp, "sum") #imp_sum = af.project_z_sum(imp) #imp_max.show() # saving af.save_hyperstack_as_image_sequence(imp_max, output_folder) af.save_hyperstack_as_image_sequence(imp_sum, output_folder) return None
def analyze(path, nc, nz, nt): # load imp = af.load_image_sequence_from_path_to_hyperstack(path, nc, nz, nt) #imp.show() # analyze imp = af.project_z(imp, "sum") #imp2.show() # save path_out = os.path.join(path,"sum_projection") af.save_hyperstack_as_image_sequence(imp, path_out) asdfds return 0