def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('chemical_name')
label_epa_reg_no = form.getvalue('label_epa_reg_no')
ar_lb = form.getvalue('application_rate')
frac_pest_surface = form.getvalue('frac_pest_assumed_at_surface')
dislodge_fol_res = form.getvalue('dislodgeable_foliar_residue')
bird_acute_oral_study = form.getvalue('bird_acute_oral_study')
bird_study_add_comm = form.getvalue('bird_study_add_comm')
low_bird_acute_ld50 = form.getvalue('low_bird_acute_oral_ld50')
test_bird_bw = form.getvalue('tested_bird_body_weight')
mamm_acute_derm_study = form.getvalue('mamm_acute_derm_study')
mamm_study_add_comm = form.getvalue('mamm_study_add_comm')
#aviandermaltype = form.getvalue('aviandermaltype')
mam_acute_derm_ld50 = form.getvalue('mamm_acute_derm_ld50')
mam_acute_oral_ld50 = form.getvalue('mam_acute_oral_ld50')
test_mam_bw = form.getvalue('tested_mamm_body_weight')
mineau_scaling_factor = float(form.getvalue('mineau_scaling_factor'))
dust_obj = dust_model.dust(True, False, 'single',chemical_name, label_epa_reg_no, ar_lb, frac_pest_surface, dislodge_fol_res, bird_acute_oral_study, bird_study_add_comm,
low_bird_acute_ld50, test_bird_bw, mineau_scaling_factor, mamm_acute_derm_study, mamm_study_add_comm, mam_acute_derm_ld50, mam_acute_oral_ld50, test_mam_bw, None)
#print vars(dust_obj)
# client = pymongo.MongoClient()
# # print client
# db = client.test_database
# posts = db.posts
# user_names={"user":"******"}
# dust_save = dict(dust_obj.__dict__,**user_names)
# posts.insert(dust_save)
# print db
# print posts
# print posts.find_one({"user":"******"})
# for post in posts.find({"user":"******"}):
# print post
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "DUST Output")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'dust','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'dust',
'model_attributes':'DUST Output'})
html = html + dust_tables.timestamp(dust_obj)
html = html + dust_tables.table_all(dust_obj)[0]
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.save_dic(html, dust_obj.__dict__, "dust", "single")
self.response.out.write(html)
def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('chemical_name')
label_epa_reg_no = form.getvalue('label_epa_reg_no')
ar_lb = form.getvalue('application_rate')
frac_pest_surface = form.getvalue('frac_pest_assumed_at_surface')
dislodge_fol_res = form.getvalue('dislodgeable_foliar_residue')
bird_acute_oral_study = form.getvalue('bird_acute_oral_study')
bird_study_add_comm = form.getvalue('bird_study_add_comm')
low_bird_acute_ld50 = form.getvalue('low_bird_acute_oral_ld50')
test_bird_bw = form.getvalue('tested_bird_body_weight')
mamm_acute_derm_study = form.getvalue('mamm_acute_derm_study')
mamm_study_add_comm = form.getvalue('mamm_study_add_comm')
mam_acute_derm_ld50 = form.getvalue('mamm_acute_derm_ld50')
test_mam_bw = form.getvalue('tested_mamm_body_weight')
mineau = form.getvalue('mineau')
dust_obj = dust_model.dust(chemical_name, label_epa_reg_no, ar_lb, frac_pest_surface, dislodge_fol_res, bird_acute_oral_study, bird_study_add_comm,
low_bird_acute_ld50, test_bird_bw, mineau, mamm_acute_derm_study, mamm_study_add_comm, mam_acute_derm_ld50, test_mam_bw)
# client = pymongo.MongoClient()
# # print client
# db = client.test_database
# posts = db.posts
# user_names={"user":"******"}
# dust_save = dict(dust_obj.__dict__,**user_names)
# posts.insert(dust_save)
# print db
# print posts
# print posts.find_one({"user":"******"})
# for post in posts.find({"user":"******"}):
# print post
templatepath = os.path.dirname(__file__) + '/../templates/'
html = template.render(templatepath + '01uberheader.html', {'title':'Ubertool'})
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'dust','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'dust',
'model_attributes':'DUST Output'})
html = html + dust_tables.table_all(dust_obj)[0]
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
self.response.out.write(html)
def html_table(row, iter):
chemical_name.append(str(row[0]))
label_epa_reg_no.append(str(row[1]))
ar_lb.append(float(row[2]))
frac_pest_surface.append(float(row[3]))
dislodge_fol_res.append(float(row[4]))
bird_acute_oral_study.append(str(row[5]))
bird_study_add_comm.append(str(row[6]))
low_bird_acute_ld50.append(float(row[7]))
test_bird_bw.append(float(row[8]))
mineau_scaling_factor.append(float(row[9]))
mamm_acute_derm_study.append(str(row[10]))
mamm_study_add_comm.append(str(row[11]))
mam_acute_derm_ld50.append(float(row[12]))
mam_acute_oral_ld50.append(float(row[13]))
test_mam_bw.append(float(row[14]))
Input_header = """<div class="out_">
<br><H3>Batch Calculation of Iteration %s</H3>
</div>""" % (
iter
)
dust_obj_temp = dust_model.dust(
True,
True,
"qaqc",
chemical_name[iter - 1],
label_epa_reg_no[iter - 1],
ar_lb[iter - 1],
frac_pest_surface[iter - 1],
dislodge_fol_res[iter - 1],
bird_acute_oral_study[iter - 1],
bird_study_add_comm[iter - 1],
low_bird_acute_ld50[iter - 1],
test_bird_bw[iter - 1],
mineau_scaling_factor[iter - 1],
mamm_acute_derm_study[iter - 1],
mamm_study_add_comm[iter - 1],
mam_acute_derm_ld50[iter - 1],
mam_acute_oral_ld50[iter - 1],
test_mam_bw[iter - 1],
)
ar_mg_out.append(dust_obj_temp.ar_mg)
bird_reptile_dermal_ld50_out.append(dust_obj_temp.bird_reptile_dermal_ld50)
gran_bird_ex_derm_dose_out.append(dust_obj_temp.gran_bird_ex_derm_dose)
gran_repamp_ex_derm_dose_out.append(dust_obj_temp.gran_repamp_ex_derm_dose)
gran_mam_ex_derm_dose_out.append(dust_obj_temp.gran_mam_ex_derm_dose)
fol_bird_ex_derm_dose_out.append(dust_obj_temp.fol_bird_ex_derm_dose)
fol_repamp_ex_derm_dose_out.append(dust_obj_temp.fol_repamp_ex_derm_dose)
fol_mam_ex_derm_dose_out.append(dust_obj_temp.fol_mam_ex_derm_dose)
bgs_bird_ex_derm_dose_out.append(dust_obj_temp.bgs_bird_ex_derm_dose)
bgs_repamp_ex_derm_dose_out.append(dust_obj_temp.bgs_repamp_ex_derm_dose)
bgs_mam_ex_derm_dose_out.append(dust_obj_temp.bgs_mam_ex_derm_dose)
amp_derm_ld50_out.append(dust_obj_temp.amp_derm_ld50)
birdrep_derm_ld50_out.append(dust_obj_temp.birdrep_derm_ld50)
mam_derm_ld50_out.append(dust_obj_temp.mam_derm_ld50)
ratio_gran_bird_out.append(dust_obj_temp.ratio_gran_bird)
LOC_gran_bird_out.append(dust_obj_temp.LOC_gran_bird)
ratio_gran_rep_out.append(dust_obj_temp.ratio_gran_rep)
LOC_gran_rep_out.append(dust_obj_temp.LOC_gran_rep)
ratio_gran_amp_out.append(dust_obj_temp.ratio_gran_amp)
LOC_gran_amp_out.append(dust_obj_temp.LOC_gran_amp)
ratio_gran_mam_out.append(dust_obj_temp.ratio_gran_mam)
LOC_gran_mam_out.append(dust_obj_temp.LOC_gran_mam)
ratio_fol_bird_out.append(dust_obj_temp.ratio_fol_bird)
LOC_fol_bird_out.append(dust_obj_temp.LOC_fol_bird)
ratio_fol_rep_out.append(dust_obj_temp.ratio_fol_rep)
LOC_fol_rep_out.append(dust_obj_temp.LOC_fol_rep)
ratio_fol_amp_out.append(dust_obj_temp.ratio_fol_amp)
LOC_fol_amp_out.append(dust_obj_temp.LOC_fol_amp)
ratio_fol_mam_out.append(dust_obj_temp.ratio_fol_mam)
LOC_fol_mam_out.append(dust_obj_temp.LOC_fol_mam)
ratio_bgs_bird_out.append(dust_obj_temp.ratio_bgs_bird)
LOC_bgs_bird_out.append(dust_obj_temp.LOC_bgs_bird)
ratio_bgs_rep_out.append(dust_obj_temp.ratio_bgs_rep)
LOC_bgs_rep_out.append(dust_obj_temp.LOC_bgs_rep)
ratio_bgs_amp_out.append(dust_obj_temp.ratio_bgs_amp)
LOC_bgs_amp_out.append(dust_obj_temp.LOC_bgs_amp)
ratio_bgs_mam_out.append(dust_obj_temp.ratio_bgs_mam)
LOC_bgs_mam_out.append(dust_obj_temp.LOC_bgs_mam)
jid_all.append(dust_obj_temp.jid)
dust_obj_all.append(dust_obj_temp)
if iter == 1:
jid_batch.append(dust_obj_temp.jid)
table_all_out = dust_tables.table_all(dust_obj_temp)
# html = html + dust_tables.table_all(dust_obj)[0]
html_table_temp = Input_header + table_all_out[0] + "<br>"
return html_table_temp
def html_table(row_inp,iter):
chemical_name_temp=row_inp[0]
chemical_name.append(chemical_name_temp)
label_epa_reg_no_temp=row_inp[1]
label_epa_reg_no.append(label_epa_reg_no_temp)
ar_lb_temp=float(row_inp[3])
ar_lb.append(ar_lb_temp)
frac_pest_surface_temp=float(row_inp[4])
frac_pest_surface.append(frac_pest_surface_temp)
dislodge_fol_res_temp=float(row_inp[5])
dislodge_fol_res.append(dislodge_fol_res_temp)
bird_acute_oral_study_temp=row_inp[6]
bird_acute_oral_study.append(bird_acute_oral_study_temp)
bird_study_add_comm_temp=row_inp[7]
bird_study_add_comm.append(bird_study_add_comm_temp)
low_bird_acute_ld50_temp=float(row_inp[8])
low_bird_acute_ld50.append(low_bird_acute_ld50_temp)
test_bird_bw_temp=float(row_inp[9])
test_bird_bw.append(test_bird_bw_temp)
mineau_temp=float(row_inp[10])
mineau.append(mineau_temp)
mamm_acute_derm_study_temp=row_inp[11]
mamm_acute_derm_study.append(mamm_acute_derm_study_temp)
mamm_study_add_comm_temp=row_inp[12]
mamm_study_add_comm.append(mamm_study_add_comm_temp)
mam_acute_derm_ld50_temp=float(row_inp[13])
mam_acute_derm_ld50.append(mam_acute_derm_ld50_temp)
test_mam_bw_temp=float(row_inp[14])
test_mam_bw.append(test_mam_bw_temp)
Input_header="""<table border="1">
<tr><H3>Batch Calculation of Iteration %s</H3></tr><br>
</table>"""%(iter)
dust_obj_temp = dust_model.dust(chemical_name_temp, label_epa_reg_no_temp, ar_lb_temp, frac_pest_surface_temp, dislodge_fol_res_temp,
bird_acute_oral_study_temp, bird_study_add_comm_temp, low_bird_acute_ld50_temp, test_bird_bw_temp,
mineau_temp, mamm_acute_derm_study_temp, mamm_study_add_comm_temp, mam_acute_derm_ld50_temp, test_mam_bw_temp)
table_all_out = dust_tables.table_all(dust_obj_temp)
# html = html + dust_tables.table_all(dust_obj)[0]
html_table_temp = Input_header + table_all_out[0]
######table 3#######
granbirdderm_out_temp=table_all_out[1]['granbirdderm']
granbirdderm_out.append(granbirdderm_out_temp)
granherpderm_out_temp=table_all_out[1]['granherpderm']
granherpderm_out.append(granherpderm_out_temp)
granmammderm_out_temp=table_all_out[1]['granmammderm']
granmammderm_out.append(granmammderm_out_temp)
######table 4#######
folbirdderm_out_temp=table_all_out[2]['folbirdderm']
folbirdderm_out.append(folbirdderm_out_temp)
folherpderm_out_temp=table_all_out[2]['folherpderm']
folherpderm_out.append(folherpderm_out_temp)
folmammderm_out_temp=table_all_out[2]['folmammderm']
folmammderm_out.append(folmammderm_out_temp)
######table 5#######
barebirdderm_out_temp=table_all_out[3]['barebirdderm']
barebirdderm_out.append(barebirdderm_out_temp)
bareherpderm_out_temp=table_all_out[3]['bareherpderm']
bareherpderm_out.append(bareherpderm_out_temp)
baremammderm_out_temp=table_all_out[3]['baremammderm']
baremammderm_out.append(baremammderm_out_temp)
######table 6#######
granbirdrisk_out_temp=table_all_out[4]['granbirdrisk']
granbirdrisk_out.append(granbirdrisk_out_temp)
granreprisk_out_temp=table_all_out[4]['granreprisk']
granreprisk_out.append(granreprisk_out_temp)
granamphibrisk_out_temp=table_all_out[4]['granamphibrisk']
granamphibrisk_out.append(granamphibrisk_out_temp)
granmammrisk_out_temp=table_all_out[4]['granmammrisk']
granmammrisk_out.append(granmammrisk_out_temp)
######table 7#######
folbirdrisk_out_temp=table_all_out[5]['folbirdrisk']
folbirdrisk_out.append(folbirdrisk_out_temp)
folreprisk_out_temp=table_all_out[5]['folreprisk']
folreprisk_out.append(folreprisk_out_temp)
folamphibrisk_out_temp=table_all_out[5]['folamphibrisk']
folamphibrisk_out.append(folamphibrisk_out_temp)
folmammrisk_out_temp=table_all_out[5]['folmammrisk']
folmammrisk_out.append(folmammrisk_out_temp)
######table 8#######
barebirdrisk_out_temp=table_all_out[6]['barebirdrisk']
barebirdrisk_out.append(barebirdrisk_out_temp)
barereprisk_out_temp=table_all_out[6]['barereprisk']
barereprisk_out.append(barereprisk_out_temp)
bareamphibrisk_out_temp=table_all_out[6]['bareamphibrisk']
bareamphibrisk_out.append(bareamphibrisk_out_temp)
baremammrisk_out_temp=table_all_out[6]['baremammrisk']
baremammrisk_out.append(baremammrisk_out_temp)
return html_table_temp
