def configure_step(self):
"""Configure build:
- set required environment variables (for netCDF, JasPer)
- patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer
- run configure script and figure how to select desired build option
- patch configure.wps file afterwards to fix 'serial compiler' setting
"""
# netCDF dependency check + setting env vars (NETCDF, NETCDFF)
set_netcdf_env_vars(self.log)
self.netcdf_mod_cmds = get_netcdf_module_set_cmds(self.log)
# WRF dependency check
wrf = get_software_root('WRF')
if wrf:
majver = get_software_version('WRF').split('.')[0]
self.wrfdir = os.path.join(wrf, "WRFV%s" % majver)
else:
self.log.error("WRF module not loaded?")
# patch compile script so that WRF is found
self.compile_script = "compile"
try:
for line in fileinput.input(self.compile_script, inplace=1, backup='.orig.wrf'):
line = re.sub(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % self.wrfdir, line)
sys.stdout.write(line)
except IOError, err:
self.log.error("Failed to patch %s script: %s" % (self.compile_script, err))
def configure_step(self):
"""Configure build:
- set some magic environment variables
- run configure script
- adjust configure.wrf file if needed
"""
wrfdir = os.path.join(self.builddir, self.wrfsubdir)
# define $NETCDF* for netCDF dependency (used when creating WRF module file)
set_netcdf_env_vars(self.log)
# HDF5 (optional) dependency
hdf5 = get_software_root('HDF5')
if hdf5:
env.setvar('HDF5', hdf5)
# check if this is parallel HDF5
phdf5_bins = ['h5pcc', 'ph5diff']
parallel_hdf5 = True
for f in phdf5_bins:
if not os.path.exists(os.path.join(hdf5, 'bin', f)):
parallel_hdf5 = False
break
if parallel_hdf5:
env.setvar('PHDF5', hdf5)
else:
self.log.info(
"Parallel HDF5 module not loaded, assuming that's OK...")
else:
self.log.info("HDF5 module not loaded, assuming that's OK...")
# Parallel netCDF (optional) dependency
pnetcdf = get_software_root('PnetCDF')
if pnetcdf:
env.setvar('PNETCDF', pnetcdf)
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERINC', os.path.join(jasper, "include"))
env.setvar('JASPERLIB', jasperlibdir)
else:
if os.getenv('JASPERINC') or os.getenv('JASPERLIB'):
raise EasyBuildError(
"JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?"
)
else:
self.log.info(
"JasPer module not loaded, assuming that's OK...")
# enable support for large file support in netCDF
env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1')
# patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions
if LooseVersion(self.version) < LooseVersion('4.0'):
patch_perl_script_autoflush(
os.path.join(wrfdir, "arch", "Config_new.pl"))
# determine build type option to look for
build_type_option = None
self.comp_fam = self.toolchain.comp_family()
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "INTEL\ \(ifort\/icc\)"
else:
build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "GNU\ \(gfortran\/gcc\)"
else:
build_type_option = "x86_64 Linux, gfortran compiler with gcc"
else:
raise EasyBuildError(
"Don't know how to figure out build type to select.")
# fetch selected build type (and make sure it makes sense)
known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm']
self.parallel_build_types = ["dmpar", "dm+sm"]
bt = self.cfg['buildtype']
if bt not in known_build_types:
raise EasyBuildError(
"Unknown build type: '%s'. Supported build types: %s", bt,
known_build_types)
# Escape the "+" in "dm+sm" since it's being used in a regexp below.
bt = bt.replace('+', r'\+')
# fetch option number based on build type option and selected build type
if LooseVersion(self.version) >= LooseVersion('3.7'):
# the two relevant lines in the configure output for WRF 3.8 are:
# 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
# 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % (
bt, build_type_option)
else:
# the relevant lines in the configure output for WRF 3.6 are:
# 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial)
# 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar)
# 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar)
# 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm)
# 32. x86_64 Linux, gfortran compiler with gcc (serial)
# 33. x86_64 Linux, gfortran compiler with gcc (smpar)
# 34. x86_64 Linux, gfortran compiler with gcc (dmpar)
# 35. x86_64 Linux, gfortran compiler with gcc (dm+sm)
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (
build_type_option, bt)
# run configure script
cmd = "./configure"
qa = {
# named group in match will be used to construct answer
"Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:":
"1",
"Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:":
"0"
}
no_qa = [
"testing for fseeko and fseeko64",
r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults"
]
std_qa = {
# named group in match will be used to construct answer
r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question:
"%(nr)s",
}
run_cmd_qa(cmd,
qa,
no_qa=no_qa,
std_qa=std_qa,
log_all=True,
simple=True)
cfgfile = 'configure.wrf'
# make sure correct compilers are being used
comps = {
'SCC': os.getenv('CC'),
'SFC': os.getenv('F90'),
'CCOMP': os.getenv('CC'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'),
}
regex_subs = [(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v)
for (k, v) in comps.items()]
apply_regex_substitutions(cfgfile, regex_subs)
# rewrite optimization options if desired
if self.cfg['rewriteopts']:
# replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment
self.log.info("Rewriting optimization options in %s" % cfgfile)
# set extra flags for Intel compilers
# see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
# -O3 -heap-arrays is required to resolve compilation error
for envvar in ['CFLAGS', 'FFLAGS']:
val = os.getenv(envvar)
if '-O3' in val:
env.setvar(envvar, '%s -heap-arrays' % val)
self.log.info("Updated %s to '%s'" %
(envvar, os.getenv(envvar)))
# replace -O3 with desired optimization options
regex_subs = [
(r"^(FCOPTIM.*)(\s-O3)(\s.*)$",
r"\1 %s \3" % os.getenv('FFLAGS')),
(r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$",
r"\1 %s \3" % os.getenv('CFLAGS')),
]
apply_regex_substitutions(cfgfile, regex_subs)
def configure_step(self):
"""Configure build:
- set some magic environment variables
- run configure script
- adjust configure.wrf file if needed
"""
# define $NETCDF* for netCDF dependency (used when creating WRF module file)
set_netcdf_env_vars(self.log)
# HDF5 (optional) dependency
hdf5 = get_software_root('HDF5')
if hdf5:
# check if this is parallel HDF5
phdf5_bins = ['h5pcc', 'ph5diff']
parallel_hdf5 = True
for f in phdf5_bins:
if not os.path.exists(os.path.join(hdf5, 'bin', f)):
parallel_hdf5 = False
break
if not (hdf5 or parallel_hdf5):
raise EasyBuildError("Parallel HDF5 module not loaded?")
else:
env.setvar('PHDF5', hdf5)
else:
self.log.info("HDF5 module not loaded, assuming that's OK...")
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERINC', os.path.join(jasper, "include"))
env.setvar('JASPERLIB', jasperlibdir)
else:
if os.getenv('JASPERINC') or os.getenv('JASPERLIB'):
raise EasyBuildError("JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?")
else:
self.log.info("JasPer module not loaded, assuming that's OK...")
# enable support for large file support in netCDF
env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1')
# patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl"))
# determine build type option to look for
build_type_option = None
self.comp_fam = self.toolchain.comp_family()
if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "INTEL\ \(ifort\/icc\)"
else:
build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc"
elif self.comp_fam == toolchain.GCC: #@UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "GNU\ \(gfortran\/gcc\)"
else:
build_type_option = "x86_64 Linux, gfortran compiler with gcc"
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
# fetch selected build type (and make sure it makes sense)
known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm']
self.parallel_build_types = ["dmpar", "smpar", "dm+sm"]
bt = self.cfg['buildtype']
if not bt in known_build_types:
raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, known_build_types)
# fetch option number based on build type option and selected build type
if LooseVersion(self.version) >= LooseVersion('3.7'):
# the two relevant lines in the configure output for WRF 3.8 are:
# 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
# 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % (bt, build_type_option)
else:
# the relevant lines in the configure output for WRF 3.6 are:
# 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial)
# 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar)
# 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar)
# 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm)
# 32. x86_64 Linux, gfortran compiler with gcc (serial)
# 33. x86_64 Linux, gfortran compiler with gcc (smpar)
# 34. x86_64 Linux, gfortran compiler with gcc (dmpar)
# 35. x86_64 Linux, gfortran compiler with gcc (dm+sm)
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (build_type_option, bt)
# run configure script
cmd = "./configure"
qa = {
# named group in match will be used to construct answer
"Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1",
"Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0"
}
no_qa = [
"testing for fseeko and fseeko64",
r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults"
]
std_qa = {
# named group in match will be used to construct answer
r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s",
}
run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True)
cfgfile = 'configure.wrf'
# make sure correct compilers are being used
comps = {
'SCC': os.getenv('CC'),
'SFC': os.getenv('F90'),
'CCOMP': os.getenv('CC'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'),
}
regex_subs = [(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v) for (k, v) in comps.items()]
apply_regex_substitutions(cfgfile, regex_subs)
# rewrite optimization options if desired
if self.cfg['rewriteopts']:
# replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment
self.log.info("Rewriting optimization options in %s" % cfgfile)
# set extra flags for Intel compilers
# see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748
if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable
# -O3 -heap-arrays is required to resolve compilation error
for envvar in ['CFLAGS', 'FFLAGS']:
val = os.getenv(envvar)
if '-O3' in val:
env.setvar(envvar, '%s -heap-arrays' % val)
self.log.info("Updated %s to '%s'" % (envvar, os.getenv(envvar)))
# replace -O3 with desired optimization options
regex_subs = [
(r"^(FCOPTIM.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('FFLAGS')),
(r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('CFLAGS')),
]
apply_regex_substitutions(cfgfile, regex_subs)
def configure_step(self):
"""Configure build:
- set some magic environment variables
- run configure script
- adjust configure.wrf file if needed
"""
# netCDF dependency
set_netcdf_env_vars(self.log)
self.netcdf_mod_cmds = get_netcdf_module_set_cmds(self.log)
# HDF5 (optional) dependency
hdf5 = get_software_root('HDF5')
if hdf5:
# check if this is parallel HDF5
phdf5_bins = ['h5pcc', 'ph5diff']
parallel_hdf5 = True
for f in phdf5_bins:
if not os.path.exists(os.path.join(hdf5, 'bin', f)):
parallel_hdf5 = False
break
if not (hdf5 or parallel_hdf5):
self.log.error("Parallel HDF5 module not loaded?")
else:
env.setvar('PHDF5', hdf5)
else:
self.log.info("HDF5 module not loaded, assuming that's OK...")
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERINC', os.path.join(jasper, "include"))
env.setvar('JASPERLIB', jasperlibdir)
else:
if os.getenv('JASPERINC') or os.getenv('JASPERLIB'):
self.log.error(
"JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?"
)
else:
self.log.info(
"JasPer module not loaded, assuming that's OK...")
# enable support for large file support in netCDF
env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1')
# patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl"))
# determine build type option to look for
build_type_option = None
self.comp_fam = self.toolchain.comp_family()
if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable
build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc"
elif self.comp_fam == toolchain.GCC: #@UndefinedVariable
build_type_option = "x86_64 Linux, gfortran compiler with gcc"
else:
self.log.error(
"Don't know how to figure out build type to select.")
# fetch selected build type (and make sure it makes sense)
known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm']
self.parallel_build_types = ["dmpar", "smpar", "dm+sm"]
bt = self.cfg['buildtype']
if not bt in known_build_types:
self.log.error(
"Unknown build type: '%s'. Supported build types: %s" %
(bt, known_build_types))
# fetch option number based on build type option and selected build type
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (
build_type_option, bt)
# run configure script
cmd = "./configure"
qa = {
# named group in match will be used to construct answer
"Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:":
"1",
"Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:":
"0"
}
no_qa = [
"testing for fseeko and fseeko64",
r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults"
]
std_qa = {
# named group in match will be used to construct answer
r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question:
"%(nr)s",
}
run_cmd_qa(cmd,
qa,
no_qa=no_qa,
std_qa=std_qa,
log_all=True,
simple=True)
cfgfile = 'configure.wrf'
# make sure correct compilers are being used
comps = {
'SCC': os.getenv('CC'),
'SFC': os.getenv('F90'),
'CCOMP': os.getenv('CC'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'),
}
for line in fileinput.input(cfgfile, inplace=1, backup='.orig.comps'):
for (k, v) in comps.items():
line = re.sub(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v, line)
sys.stdout.write(line)
# rewrite optimization options if desired
if self.cfg['rewriteopts']:
# replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment
self.log.info("Rewriting optimization options in %s" % cfgfile)
# set extra flags for Intel compilers
# see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748
if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable
# -O3 -heap-arrays is required to resolve compilation error
for envvar in ['CFLAGS', 'FFLAGS']:
val = os.getenv(envvar)
if '-O3' in val:
env.setvar(envvar, '%s -heap-arrays' % val)
self.log.info("Updated %s to '%s'" %
(envvar, os.getenv(envvar)))
# replace -O3 with desired optimization options
for line in fileinput.input(cfgfile,
inplace=1,
backup='.orig.rewriteopts'):
line = re.sub(r"^(FCOPTIM.*)(\s-O3)(\s.*)$",
r"\1 %s \3" % os.getenv('FFLAGS'), line)
line = re.sub(r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$",
r"\1 %s \3" % os.getenv('CFLAGS'), line)
sys.stdout.write(line)
def configure_step(self):
"""Configure build:
- set required environment variables (for netCDF, JasPer)
- patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer
- run configure script and figure how to select desired build option
- patch configure.wps file afterwards to fix 'serial compiler' setting
"""
# netCDF dependency check + setting env vars (NETCDF, NETCDFF)
set_netcdf_env_vars(self.log)
# WRF dependency check
wrf = get_software_root('WRF')
if wrf:
wrfdir = os.path.join(wrf,
det_wrf_subdir(get_software_version('WRF')))
else:
raise EasyBuildError("WRF module not loaded?")
self.compile_script = 'compile'
if LooseVersion(self.version) >= LooseVersion('4.0.3'):
# specify install location of WRF via $WRF_DIR (supported since WPS 4.0.3)
# see https://github.com/wrf-model/WPS/pull/102
env.setvar('WRF_DIR', wrfdir)
else:
# patch compile script so that WRF is found
regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$",
r"\1%s\2" % wrfdir)]
apply_regex_substitutions(self.compile_script, regex_subs)
# libpng dependency check
libpng = get_software_root('libpng')
zlib = get_software_root('zlib')
if libpng:
paths = [libpng]
if zlib:
paths.insert(0, zlib)
libpnginc = ' '.join(
['-I%s' % os.path.join(path, 'include') for path in paths])
libpnglib = ' '.join(
['-L%s' % os.path.join(path, 'lib') for path in paths])
else:
# define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng)
libpnglib = ""
libpnginc = ""
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
env.setvar('JASPERINC', os.path.join(jasper, "include"))
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERLIB', jasperlibdir)
jasperlib = "-L%s" % jasperlibdir
else:
raise EasyBuildError("JasPer module not loaded?")
# patch ungrib Makefile so that JasPer is found
jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib)
regex_subs = [
(r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$",
r"\1 %s\2" % jasperlibs),
(r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$",
r"\1 %s\2" % jasperlibs),
]
apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'),
regex_subs)
# patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config.pl"))
# configure
# determine build type option to look for
self.comp_fam = self.toolchain.comp_family()
build_type_option = None
if LooseVersion(self.version) >= LooseVersion("3.4"):
knownbuildtypes = {'smpar': 'serial', 'dmpar': 'dmpar'}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = " Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
if LooseVersion(self.version) >= LooseVersion("3.6"):
build_type_option = "Linux x86_64, gfortran"
else:
build_type_option = "Linux x86_64 g95"
else:
raise EasyBuildError(
"Don't know how to figure out build type to select.")
else:
knownbuildtypes = {'smpar': 'serial', 'dmpar': 'DM parallel'}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = "PC Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "PC Linux x86_64, gfortran compiler,"
knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper()
else:
raise EasyBuildError(
"Don't know how to figure out build type to select.")
# check and fetch selected build type
bt = self.cfg['buildtype']
if bt not in knownbuildtypes.keys():
raise EasyBuildError(
"Unknown build type: '%s'. Supported build types: %s", bt,
knownbuildtypes.keys())
# fetch option number based on build type option and selected build type
build_type_question = r"\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % (
build_type_option, knownbuildtypes[bt])
cmd = ' '.join(
[self.cfg['preconfigopts'], './configure', self.cfg['configopts']])
qa = {}
no_qa = [".*compiler is.*"]
std_qa = {
# named group in match will be used to construct answer
r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question:
"%(nr)s",
}
run_cmd_qa(cmd,
qa,
no_qa=no_qa,
std_qa=std_qa,
log_all=True,
simple=True)
# make sure correct compilers and compiler flags are being used
comps = {
'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc),
'SFC': os.getenv('F90'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': os.getenv('MPICC'),
'FC': os.getenv('MPIF90'),
'CC': os.getenv('MPICC'),
}
if self.toolchain.options.get('openmp', None):
comps.update({
'LDFLAGS':
'%s %s' %
(self.toolchain.get_flag('openmp'), os.environ['LDFLAGS'])
})
regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val)
for (key, val) in comps.items()]
apply_regex_substitutions('configure.wps', regex_subs)
def configure_step(self):
"""Configure build:
- set required environment variables (for netCDF, JasPer)
- patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer
- run configure script and figure how to select desired build option
- patch configure.wps file afterwards to fix 'serial compiler' setting
"""
# netCDF dependency check + setting env vars (NETCDF, NETCDFF)
set_netcdf_env_vars(self.log)
# WRF dependency check
wrf = get_software_root('WRF')
if wrf:
wrfdir = os.path.join(wrf, det_wrf_subdir(get_software_version('WRF')))
else:
raise EasyBuildError("WRF module not loaded?")
# patch compile script so that WRF is found
self.compile_script = "compile"
regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % wrfdir)]
apply_regex_substitutions(self.compile_script, regex_subs)
# libpng dependency check
libpng = get_software_root('libpng')
zlib = get_software_root('zlib')
if libpng:
paths = [libpng]
if zlib:
paths.insert(0, zlib)
libpnginc = ' '.join(['-I%s' % os.path.join(path, 'include') for path in paths])
libpnglib = ' '.join(['-L%s' % os.path.join(path, 'lib') for path in paths])
else:
# define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng)
libpnglib = ""
libpnginc = ""
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
env.setvar('JASPERINC', os.path.join(jasper, "include"))
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERLIB', jasperlibdir)
jasperlib = "-L%s" % jasperlibdir
else:
raise EasyBuildError("JasPer module not loaded?")
# patch ungrib Makefile so that JasPer is found
jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib)
regex_subs = [
(r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$", r"\1 %s\2" % jasperlibs),
(r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$", r"\1 %s\2" % jasperlibs),
]
apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'), regex_subs)
# patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config.pl"))
# configure
# determine build type option to look for
self.comp_fam = self.toolchain.comp_family()
build_type_option = None
if LooseVersion(self.version) >= LooseVersion("3.4"):
knownbuildtypes = {
'smpar': 'serial',
'dmpar': 'dmpar'
}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = " Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "Linux x86_64 g95 compiler"
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
else:
knownbuildtypes = {
'smpar': 'serial',
'dmpar': 'DM parallel'
}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = "PC Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "PC Linux x86_64, gfortran compiler,"
knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper()
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
# check and fetch selected build type
bt = self.cfg['buildtype']
if bt not in knownbuildtypes.keys():
raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, knownbuildtypes.keys())
# fetch option number based on build type option and selected build type
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % (build_type_option, knownbuildtypes[bt])
cmd = "./configure"
qa = {}
no_qa = [".*compiler is.*"]
std_qa = {
# named group in match will be used to construct answer
r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s",
}
run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True)
# make sure correct compilers and compiler flags are being used
comps = {
'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc),
'SFC': os.getenv('F90'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': os.getenv('MPICC'),
'FC': os.getenv('MPIF90'),
'CC': os.getenv('MPICC'),
}
regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val) for (key, val) in comps.items()]
apply_regex_substitutions('configure.wps', regex_subs)
def configure_step(self):
"""Configure build:
- set some magic environment variables
- run configure script
- adjust configure.wrf file if needed
"""
# define $NETCDF* for netCDF dependency (used when creating WRF module file)
set_netcdf_env_vars(self.log)
# HDF5 (optional) dependency
hdf5 = get_software_root('HDF5')
if hdf5:
# check if this is parallel HDF5
phdf5_bins = ['h5pcc', 'ph5diff']
parallel_hdf5 = True
for f in phdf5_bins:
if not os.path.exists(os.path.join(hdf5, 'bin', f)):
parallel_hdf5 = False
break
if not (hdf5 or parallel_hdf5):
raise EasyBuildError("Parallel HDF5 module not loaded?")
else:
env.setvar('PHDF5', hdf5)
else:
self.log.info("HDF5 module not loaded, assuming that's OK...")
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERINC', os.path.join(jasper, "include"))
env.setvar('JASPERLIB', jasperlibdir)
else:
if os.getenv('JASPERINC') or os.getenv('JASPERLIB'):
raise EasyBuildError("JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?")
else:
self.log.info("JasPer module not loaded, assuming that's OK...")
# enable support for large file support in netCDF
env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1')
# patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl"))
# determine build type option to look for
build_type_option = None
self.comp_fam = self.toolchain.comp_family()
if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "INTEL\ \(ifort\/icc\)"
else:
build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc"
elif self.comp_fam == toolchain.GCC: #@UndefinedVariable
if LooseVersion(self.version) >= LooseVersion('3.7'):
build_type_option = "GNU\ \(gfortran\/gcc\)"
else:
build_type_option = "x86_64 Linux, gfortran compiler with gcc"
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
# fetch selected build type (and make sure it makes sense)
known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm']
self.parallel_build_types = ["dmpar", "smpar", "dm+sm"]
bt = self.cfg['buildtype']
if not bt in known_build_types:
raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, known_build_types)
# fetch option number based on build type option and selected build type
if LooseVersion(self.version) >= LooseVersion('3.7'):
# the two relevant lines in the configure output for WRF 3.8 are:
# 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
# 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % (bt, build_type_option)
else:
# the relevant lines in the configure output for WRF 3.6 are:
# 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial)
# 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar)
# 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar)
# 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm)
# 32. x86_64 Linux, gfortran compiler with gcc (serial)
# 33. x86_64 Linux, gfortran compiler with gcc (smpar)
# 34. x86_64 Linux, gfortran compiler with gcc (dmpar)
# 35. x86_64 Linux, gfortran compiler with gcc (dm+sm)
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (build_type_option, bt)
# run configure script
cmd = "./configure"
qa = {
# named group in match will be used to construct answer
"Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1",
"Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0"
}
no_qa = [
"testing for fseeko and fseeko64",
r"If you wish to change the default options, edit the file:[\s
]*arch/configure_new.defaults"
]
