def test_make_html_file(self):
"""The HTML file is created in the right location"""
html_fp = get_tmp_filename(tmp_dir=self.tmp_dir)
make_html_file(self.mapping_file_lines, html_fp)
self.assertTrue(
path.exists(html_fp),
'The html file was not created in the appropiate location')
from qiime.util import parse_command_line_parameters, make_option
from fastunifrac.make_sample_counts_html import make_html_file
script_info = {}
script_info['brief_description'] = """Generates an html file with a table with\
the results of the sample counts analysis."""
script_info['script_description'] = """Generates an html file with a table with\
the results of the sample counts analysis."""
script_info['script_usage'] = [
("Example", "Generate an html called 'index.html' with the sample counts" +
" stored at 'per_library_stats_output_file'",
"%prog -m per_library_stats_output_file -o index.html")
]
script_info['output_description'] = ""
script_info['required_options'] = [
make_option('-m', '--mapping_fp', type='existing_filepath',
help="Mapping file output from per_library_stats.py"),
make_option('-o', '--output_html_fp', type='new_filepath',
help="Html filepath")
]
script_info['optional_options'] = []
script_info['version'] = __version__
if __name__ == '__main__':
option_parser, opts, args = parse_command_line_parameters(**script_info)
mapping_fp = opts.mapping_fp
html_fp = opts.output_html_fp
make_html_file(open(mapping_fp, 'U'), html_fp)
