def recognize(url):
net = loadnet("ffnet.net")
all_answers = []
n_iter = 0
while True:
n_iter = n_iter + 1
if n_iter > 15: break
print "iteration ", n_iter
stream = ImageFileIO.ImageFileIO(urllib.urlopen(url))
pat = loadimg(stream)
if len(pat) != 6:
continue
answer = ""
for letter in pat:
arr = np.array(getbits(letter))
answer += alphabet[net(arr).argmax()]
all_answers.append(answer)
result = []
for x in range(0,6):
what, count = collections.Counter([a[x] for a in all_answers]).most_common(1)[0]
if count < 3: break # majority is 3 votes
result.append(what)
if len(result) == 6:
print result
break
print all_answers
Image.open(ImageFileIO.ImageFileIO(urllib.urlopen(url))).show()
def _main(argv):
from ffnet import loadnet
from utils import import_letter
if len(argv) < 3:
print >> sys.stderr, 'Usage: {0} network_file.net letter_file.png'.format(argv[0])
exit(1)
net = loadnet(argv[1])
ipt = import_letter(argv[2])
output = net(ipt)
letter = output.argmax()
print chr(65+letter)
def main():
# load network
net = loadnet('expData/rt_rr_statwosysdsk.network')
timesSuggested = 0
loglines = open('expData/partTrace.csv')
for line in loglines:
metrics = line.split(',')
rt = float(metrics[1])
w = int(metrics[2])
carr = [float(metrics[i]) for i in [3, 4, 6, 7, 10, 11, 12, 13]]
inputs = numpy.array(carr)
o, r = net.test([inputs], [100], iprint=0)
print "Avg. RT: " + str(rt) + " Workers: " + str(
w) + " Predicted RT: " + str(o[0][0])
print "Request rate and stat: ",
for i in carr:
print i,
print
k = 0
while rt > 100:
# inputs=numpy.array(carr)*(float(w)/float(w+k))
inputs = numpy.array(estimateMetrics(carr, w, k))
print "\t\tEstimates: ",
for i in inputs:
print i,
print
o, r = net.test([inputs], [100], iprint=0)
rt = o[0][0]
print "\t\tPredicted RT:", rt, " Workers: ", w + k
if rt < 100:
break
k += 1
rt = float(metrics[1])
while rt < 70 and w > 1:
k -= 1
# inputs=numpy.array(carr)*(float(w)/float(w+k))
inputs = numpy.array(estimateMetrics(carr, w, k))
print "\t\tEstimates: ",
for i in inputs:
print i,
print
o, r = net.test([inputs], [100], iprint=0)
rt = o[0][0]
print "\t\tPredicted RT:", rt, " Workers: ", w + k
if rt > 70:
k += 1
break
if w + k == 1:
break
if k != 0:
print "\tSuggested k", k
def recognize(imgpath):
net = loadnet("captcha.net")
pics = loadimg(imgpath)
if len(pics) != 5:
print "skipping, recognized symbols:" + str(len(pics))
return
res = ""
for letter in pics:
inputbits = getbits(drawletter(letter))
res = res + recognizeletter(net, inputbits)
print res
def recognize(imgpath):
net = loadnet("captcha.net")
pics = loadimg(imgpath)
if len(pics) != 5:
print "skipping, recognized symbols:" + str(len(pics))
return;
res = ""
for letter in pics:
inputbits = getbits(drawletter(letter))
res = res + recognizeletter(net, inputbits)
print res
def import_network(ANNname, Nlayers, Nneurons):
from ffnet import loadnet
import os
try:
f = '{0:}_{1:}_{2:}'.format(ANNname, Nlayers, Nneurons)
net = loadnet(f)
print 'Loaded network from file: ', f
print 'Network limits:', net.inlimits
return net
except Exception, e:
print 'Error when loading ffnet network file', e
raise (e)
def __init__(self):
super(NeuralNetwork, self).__init__()
self.field = Field(20, 20)
self.outputs = []
self.input = []
self.target = []
b = QtGui.QPushButton("Learn!")
self.connect(b, QtCore.SIGNAL("clicked()"), self.learn)
self.outcomes_list = QtGui.QComboBox()
self._add_output("Square")
self._add_output("Triangle")
self._add_output("Line")
hpanel = QtGui.QHBoxLayout()
hpanel.addWidget(self.outcomes_list)
hpanel.addWidget(b)
btn_classify = QtGui.QPushButton("Classify")
self.connect(btn_classify, QtCore.SIGNAL("clicked()"), self.classify)
btn_clear = QtGui.QPushButton("Clear")
self.connect(btn_clear, QtCore.SIGNAL("clicked()"), self.clear)
self.label_output = QtGui.QLabel()
self.label_output.setMaximumHeight(20)
self.label_epoch = QtGui.QLabel()
self.label_epoch.setMaximumHeight(20)
vpanel = QtGui.QVBoxLayout()
vpanel.addWidget(self.field)
vpanel.addLayout(hpanel)
vpanel.addWidget(self.label_output)
vpanel.addWidget(self.label_epoch)
vpanel.addWidget(btn_classify)
vpanel.addWidget(btn_clear)
self.setLayout(vpanel)
try:
self.net, self.epoch = loadnet("netdata.dat")
except IOError:
conec = mlgraph((self.field.x*self.field.y, 10, 10, 3))
self.net = ffnet(conec)
self.epoch = 0
def __init__(self):
super(NeuralNetwork, self).__init__()
self.field = Field(20, 20)
self.outputs = []
self.input = []
self.target = []
b = QtGui.QPushButton("Learn!")
self.connect(b, QtCore.SIGNAL("clicked()"), self.learn)
self.outcomes_list = QtGui.QComboBox()
self._add_output("Square")
self._add_output("Triangle")
self._add_output("Line")
hpanel = QtGui.QHBoxLayout()
hpanel.addWidget(self.outcomes_list)
hpanel.addWidget(b)
btn_classify = QtGui.QPushButton("Classify")
self.connect(btn_classify, QtCore.SIGNAL("clicked()"), self.classify)
btn_clear = QtGui.QPushButton("Clear")
self.connect(btn_clear, QtCore.SIGNAL("clicked()"), self.clear)
self.label_output = QtGui.QLabel()
self.label_output.setMaximumHeight(20)
self.label_epoch = QtGui.QLabel()
self.label_epoch.setMaximumHeight(20)
vpanel = QtGui.QVBoxLayout()
vpanel.addWidget(self.field)
vpanel.addLayout(hpanel)
vpanel.addWidget(self.label_output)
vpanel.addWidget(self.label_epoch)
vpanel.addWidget(btn_classify)
vpanel.addWidget(btn_clear)
self.setLayout(vpanel)
try:
self.net, self.epoch = loadnet("netdata.dat")
except IOError:
conec = mlgraph((self.field.x * self.field.y, 10, 10, 3))
self.net = ffnet(conec)
self.epoch = 0
def verify(data):
print "loading ffnet"
net = loadnet("ffnet.net")
success = 0;
print "verifying %d samples" % len(data)
for inp,out in data:
arr = np.array(inp)
result = net(arr)
expected = alphabet[out.index(max(out))]
recognized = alphabet[result.argmax()]
if expected == recognized:
success = success + 1
print "%d of %d recognized, precision is %f" % (success, len(data), success / (len(data) * 1.0))
def save_network(self):
# Save/load/export network
from ffnet import savenet, loadnet, exportnet
print "Network is saved..."
savenet(self.net, "xor.net")
print "Network is reloaded..."
net = loadnet("xor.net")
print "Network is tested again, but nothing is printed..."
output, regression = net.test(input, target, iprint=0)
print
print "Exporting trained network to the fortran source..."
exportnet(net, "xor.f")
print "Done..."
print "Look at the generated xor.f file."
print "Note: you must compile xor.f along with the ffnet.f"
print "file which can be found in ffnet sources."
def load_speaker_recognition_newtork(filename, create_new=False):
"""
Load or create (if you want) network for speker recognition form file
returns tuple: (network, people_names, people_number)
"""
people = voice_sample.get_names();
people_num = len(people)
network = None
try:
network = loadnet(filename)
except IOError, ex:
if create_new:
network = ffnet(mlgraph((LPC_COE_NUM, people_num + LPC_COE_NUM,
#network = ffnet(mlgraph((LPC_COE_NUM, 10,
people_num)) )
def test():
app = FFnetApp()
# Add test network
from ffnet import loadnet
n = app.network
path = "data/testnet.net"
n.net = loadnet(path)
n.filename = path
## Add test data
app.data.input_loader.filename = "data/black-scholes-input.dat"
app.data.target_loader.filename = "data/black-scholes-target.dat"
app.data.load()
app.mode = "train"
app._arrange_plots()
# Run
app.configure_traits()
return app
def load_speaker_recognition_newtork(filename, create_new=False):
"""
Load or create (if you want) network for speker recognition form file
returns tuple: (network, people_names, people_number)
"""
people = voice_sample.get_names()
people_num = len(people)
network = None
try:
network = loadnet(filename)
except IOError, ex:
if create_new:
network = ffnet(
mlgraph((
LPC_COE_NUM,
people_num + LPC_COE_NUM,
#network = ffnet(mlgraph((LPC_COE_NUM, 10,
people_num)))
def Plot_Scatter_ANN_LUT(net_file, LUT_file, coeff, dir2dir=False):
import numpy as np
import matplotlib.pyplot as plt
import ffnet as ff
LUT = Getting_Arrays(LUT_file)
net = ff.loadnet(net_file)
src = LUT['src']
trg = LUT['T'] if dir2dir else LUT['S']
net_out = net(src)
rel_error = np.minimum(
np.abs(
(net_out[:, coeff] - trg[:, coeff]) / trg[:, coeff]), 1.1) * 100.0
rmse, rel_rmse = RMSE(net_out[:, coeff], trg[:, coeff])
plt.plot([-0.1, 1.1], [-0.1, 1.1], color='black')
plt.scatter(net_out[:, coeff],
trg[:, coeff],
s=3,
cmap='RdYlGn_r',
c=rel_error,
lw=0.0)
ticks = np.linspace(0.0, 100.0, 11)
cb = plt.colorbar(ticks=ticks)
cb.set_label('rel. error [%]')
plt.xlim([-0.1, 1.1])
plt.ylim([-0.1, 1.1])
plt.title('%d :: %f :: %f' % (coeff, rmse, rel_rmse))
plt.grid()
return
def _main(argv):
if len(argv) < 3:
print >> sys.stderr, USAGE.format(argv[0])
exit(1)
net_filename = argv[1]
if argv[2] == 'train':
if len(argv) < 4:
print >> sys.stderr, USAGE.format(argv[0])
exit(1)
pattern_filename = argv[3]
train_method = "momentum"
if len(argv) > 4:
train_method = argv[4]
# number of train runs does not affect the network
# trained_up_to_times = int(argv[4])
trained_up_to_times = 1
print("Will train networks on: {0}...".format(pattern_filename))
create_then_save_network_trained_on(
net_filename,
pattern_filename,
train_method)
elif argv[2] == 'regress':
input, output = load_snns('letters.pat')
net = loadnet(net_filename)
regression_analysis(net, input, output)
elif argv[2] == 'letter':
if len(argv) < 4:
print >> sys.stderr, USAGE.format(argv[0])
exit(1)
input, _ = load_snns('letters.pat')
net = loadnet(net_filename)
letter = ord(argv[3][0])-65
if letter < 0 or letter > 25:
print >> sys.stderr, "Letter must be uppercase A-Z"
exit(1)
plot_net_output(net, input[letter])
elif argv[2] == 'test':
if len(argv) < 4:
print >> sys.stderr, USAGE.format(argv[0])
exit(1)
max_noise_num = int(argv[3])
input, target = load_snns('letters.pat')
# Load net
net = loadnet(net_filename)
# plot and save results
print("Plotting results...")
plot_save_regressions(
compute_regressions_for_noise_amount(net, input, target, max_noise_num),
net_filename)
elif argv[2] == "compare":
if len(argv) < 5:
print >> sys.stderr, USAGE.format(argv[0])
exit(1)
input, target = load_snns('letters.pat')
filenames = [argv[1]] + argv[4:]
max_noise_num = int(argv[3])
plot_save_regressions_compare(filenames, input, target, max_noise_num)
# Train network
#first find good starting point with genetic algorithm (not necessary, but may be helpful)
print "FINDING STARTING WEIGHTS WITH GENETIC ALGORITHM..."
net.train_genetic(input, target, individuals=20, generations=500)
#then train with scipy tnc optimizer
print "TRAINING NETWORK..."
net.train_tnc(input, target, maxfun=1000, messages=1)
# Test network
print
print "TESTING NETWORK..."
output, regression = net.test(input, target, iprint=2)
# Save/load/export network
from ffnet import savenet, loadnet, exportnet
print "Network is saved..."
savenet(net, "xor.net")
print "Network is reloaded..."
net = loadnet("xor.net")
print "Network is tested again, but nothing is printed..."
output, regression = net.test(input, target, iprint=0)
print
print "Exporting trained network to the fortran source..."
exportnet(net, "xor.f")
print "Done..."
print "Look at the generated xor.f file."
print "Note: you must compile xor.f along with the ffnet.f"
print "file which can be found in ffnet sources."
target = [[1.], [0.], [0.], [1.]]
# Train network
#first find good starting point with genetic algorithm (not necessary, but may be helpful)
print "FINDING STARTING WEIGHTS WITH GENETIC ALGORITHM..."
net.train_genetic(input, target, individuals=20, generations=500)
#then train with scipy tnc optimizer
print "TRAINING NETWORK..."
net.train_tnc(input, target, maxfun = 1000, messages=1)
# Test network
print
print "TESTING NETWORK..."
output, regression = net.test(input, target, iprint = 2)
# Save/load/export network
from ffnet import savenet, loadnet, exportnet
print "Network is saved..."
savenet(net, "xor.net")
print "Network is reloaded..."
net = loadnet("xor.net")
print "Network is tested again, but nothing is printed..."
output, regression = net.test(input, target, iprint = 0)
print
print "Exporting trained network to the fortran source..."
exportnet(net, "xor.f")
print "Done..."
print "Look at the generated xor.f file."
print "Note: you must compile xor.f along with the ffnet.f"
print "file which can be found in ffnet sources."
def plot_save_regressions_compare(net_filenames, input, target, max_noise_amount):
from pylab import (imshow,plot,legend,xticks,ylim,xlim,axhline,title,
xlabel,ylabel,arange,show,cm,figure,savefig,save,imsave)
names = [ n.rsplit('.',1)[0].rsplit('_',1).pop() for n in net_filenames ]
networks = [ loadnet(filename) for filename in net_filenames ]
regressions = [ compute_regressions_for_noise_amount(
net, input, target, max_noise_amount) for net in networks ]
# how many noise levels we have to draw
N = max_noise_amount+1
print("Will plot for for {} noise levels...".format(N))
ind = arange(N) # the x locations for the groups
print("ind = {}".format(ind))
width = 0.35 # the width of the bars
# projection id -> name, as returned into tuples by http://ffnet.sourceforge.net/apidoc.html#ffnet.ffnet.test
y_name = ["slope",
"intercept",
"r-value",
"p-value",
"slope stderr",
"estim. stderr"]
for projection_id in range(6): # todo has bug? how do i select the data
#subplot(11 + projection_id * 100) # a new plot
figure()
projection_name = y_name[projection_id]
ylabel(projection_name)
ylim(0,1)
print("Plotting for projection: " + projection_name)
title(projection_name + " for noise levels...") # todo change me?
for name, regress in zip(names, regressions):
projections = regress.T[projection_id]
print("Projections on {} tuple field ({}) = {}".format(
projection_id, projection_name, projections))
plot(ind, projections, label = name)
# for i in ind:
# bar(i, projections[i], width, color='b') # plot it
# bar(ind, projections[ind], width, color='b') # plot it
xticks(ind, range(0, N)) # todo print noise levels
xlim(0,N-1)
axhline(linewidth=1, color='black')
xlabel("Noise amount")
legend()
# debug uncomment to look at graphs
# show()
plot_output_formats = ['png', 'eps']
for format in plot_output_formats:
plot_name = re_sub(
"[^a-z]",
"_",
y_name[projection_id].lower() )
plot_filename = "compare_plot_{}.{}".format(
plot_name,
format)
savefig(plot_filename, orientation='portrait')
print("Saved plot as: {}.".format(plot_filename))
input_data, certainty = get_nnet_input_data(m)
output_data = np.array(binary_solution, dtype=np.float32)
if X_train is None:
X_train = input_data
Y_train = output_data
else:
X_train = np.concatenate((X_train, input_data), axis=0)
Y_train = np.concatenate((Y_train, output_data), axis=0)
net.train_tnc(X_train, Y_train, nproc=4, maxfun=200000, messages=2)
savenet(net, "morse.net")
else:
net = loadnet("morse.net")
## ===============================
## GENERATE SUBMISSION
## ===============================
with open('sampleSubmission.csv') as f:
trainingset = f.read().split("\n")
files = [(('000' + x.split(",")[0])[-3:], x.split(",")[1])
for x in trainingset[1:] if "," in x]
f = open('submission.csv', 'w')
f.write("ID,Prediction\n")
for filenum, m.text in files:
def load(self, filename):
self.network = loadnet(filename)
ind_net = np.linspace(0, len(dim_LUT) - 1, num=net_res)
val, ind = [], []
for x in var:
if x in LUT.keys():
if x == dim:
val.append(dim_net)
ind.append(ind_net)
else:
val.append(
np.ones((len(dim_net), ), dtype=float) * LUT[x][const_val[x]])
ind.append(
np.ones((len(dim_net), ), dtype=float) * float(const_val[x]))
val, ind = np.array(val).T, np.array(ind).T
net = ff.loadnet(net_file)
net_out = net(ind)
coef_name = 'T' if dir2dir else 'S'
trg = LUT[coef_name].reshape(
(len(LUT['dz']), len(LUT['kabs']), len(LUT['ksca']), len(LUT['g']),
LUT[coef_name].shape[1]))
err = LUT[coef_name + '_tol'].reshape(
(len(LUT['dz']), len(LUT['kabs']), len(LUT['ksca']), len(LUT['g']),
LUT[coef_name].shape[1]))
if dim == 'dz':
trg = trg[:, const_val['kabs'], const_val['ksca'], const_val['g'], :]
err = err[:, const_val['kabs'], const_val['ksca'], const_val['g'], :]
elif dim == 'kabs':
trg = trg[const_val['dz'], :, const_val['ksca'], const_val['g'], :]
err = err[const_val['dz'], :, const_val['ksca'], const_val['g'], :]
def ANN_to_NetCDF(net, out_file, iprint=True, **data):
import netCDF4 as nc
import numpy as np
import ffnet as ff
if iprint:
print 'Exporting Network "{}" to .nc file :: {}'.format(net, out_file)
if type(net) == str:
network = ff.loadnet(net_file)
else:
network = net
# transpose arrays to fortran order
Tweights = network.weights.T
Tconec = network.conec.T
Tunits = network.units.T
Tinno = network.inno.T
Toutno = network.outno.T
Teni = network.eni.T
Tdeo = network.deo.T
Tinlimits = network.inlimits.T
for key, val in data.iteritems():
data[key] = val.T
dataset = nc.Dataset(out_file, 'w', format='NETCDF4')
dataset.createDimension('weights_dim1', np.shape(Tweights)[0])
dataset.createDimension('conec_dim1',
np.shape(Tconec)[0])
dataset.createDimension('conec_dim2',
np.shape(Tconec)[1])
dataset.createDimension('units_dim1', np.shape(Tunits)[0])
dataset.createDimension('inno_dim1', np.shape(Tinno)[0])
dataset.createDimension('outno_dim1', np.shape(Toutno)[0])
dataset.createDimension('eni_dim1',
np.shape(Teni)[0])
dataset.createDimension('eni_dim2',
np.shape(Teni)[1])
dataset.createDimension('deo_dim1',
np.shape(Tdeo)[0])
dataset.createDimension('deo_dim2',
np.shape(Tdeo)[1])
dataset.createDimension('inlimits_dim1',
np.shape(Tinlimits)[0])
dataset.createDimension('inlimits_dim2',
np.shape(Tinlimits)[1])
for key, val in data.iteritems():
dataset.createDimension('pspace.{}_dim1'.format(key),
np.shape(data[key])[0])
weights = dataset.createVariable('weights', 'f8', 'weights_dim1')
conec = dataset.createVariable('conec', 'i', ('conec_dim1', 'conec_dim2'))
units = dataset.createVariable('units', 'f8', 'units_dim1')
inno = dataset.createVariable('inno', 'i', 'inno_dim1')
outno = dataset.createVariable('outno', 'i', 'outno_dim1')
eni = dataset.createVariable('eni', 'f8', ('eni_dim1', 'eni_dim2'))
deo = dataset.createVariable('deo', 'f8', ('deo_dim1', 'deo_dim2'))
inlimits = dataset.createVariable('inlimits', 'f8',
('inlimits_dim1', 'inlimits_dim2'))
dataset_list = {}
for key, val in data.iteritems():
dataset_list[key] = dataset.createVariable(
'pspace.{}'.format(key), 'f8', 'pspace.{}_dim1'.format(key))
weights[:] = Tweights
conec[:] = Tconec
units[:] = Tunits
inno[:] = Tinno
outno[:] = Toutno
eni[:] = Teni
deo[:] = Tdeo
inlimits[:] = Tinlimits
for key, var in dataset_list.iteritems():
var[:] = data[key]
dataset.close()
return
input_data, certainty = get_nnet_input_data(m)
output_data = np.array(binary_solution, dtype=np.float32)
if X_train is None:
X_train = input_data
Y_train = output_data
else:
X_train = np.concatenate((X_train, input_data), axis=0)
Y_train = np.concatenate((Y_train, output_data), axis=0)
net.train_tnc(X_train, Y_train, nproc=4, maxfun=200000, messages=2)
savenet(net, "morse.net")
else:
net = loadnet("morse.net")
## ===============================
## GENERATE SUBMISSION
## ===============================
with open('sampleSubmission.csv') as f:
trainingset = f.read().split("\n")
files = [(('000' + x.split(",")[0])[-3:], x.split(",")[1]) for x in trainingset[1:] if "," in x]
f = open('submission.csv','w')
f.write("ID,Prediction\n")
for filenum, m.text in files:
if len(m.text) > 0:
def main():
# load network
net = loadnet('prcntrt_rr_statwosysdsk.network')
plog = open('predict.log', 'w')
metriclog = open('metric.log', 'wb')
mlog = csv.writer(metriclog)
scalelog = open('scale.log', 'w')
accesslog = open('/var/log/apache2/access.log', 'r')
loglines = follow(accesslog)
first = True
cts = -1
RT = 0
RTs = []
N = 0
timesSuggested = 0
workerStatus = workerInit()
w = sum(workerStatus.values())
# exit(0)
for line in loglines:
try:
if first:
matches = re.search(
'.*:([0-9]*:[0-9]*:[0-9])[0-9] .* ([0-9]*)', line)
cts = matches.group(1)
RT = float(matches.group(2)) / 1000.
RTs.append(RT)
N = 1
first = False
else:
# print line
matches = re.search(
'.*:([0-9]*:[0-9]*:[0-9])[0-9] .* ([0-9]*)', line)
ts = matches.group(1)
if cts == ts:
RTs.append(float(matches.group(2)) / 1000.)
RT += float(matches.group(2)) / 1000.
N += 1
elif cts < ts or (ts[0:7] == "00:00:0"
and cts[0:7] == "23:59:5"):
rt = float(RT / N)
avgrt = rt
rr = N
p_95 = numpy.percentile(RTs, 95)
print "====== Average RT for ten second interval %s is %0.2f, 95th percentile is: %0.2f and RC is %d ======" % (
cts, rt, p_95, rr)
cts = ts
RT = float(matches.group(2)) / 1000.
N = 1
RTs = [RT]
# statcmd= '''tail -n 10 stat | grep '[0-9]*:[0-9]*:[0-9]*' | sed 's/ \+/ /g' | cut -d ' ' -f 2-5,8- | awk '{for (i=1;i<=NF;i++){a[i]+=$i;}} END {for (i=1;i<=NF;i++){printf "%f ", a[i]/NR;}}' '''
statcmd = '''ssh -i %s %s@%s 'tail -n 10 stat' | grep '[0-9]*:[0-9]*:[0-9]*' | sed 's/ \+/ /g' | cut -d ' ' -f %s | awk '{for (i=1;i<=NF;i++){a[i]+=$i;}} END {for (i=1;i<=NF;i++){printf "%%f ", a[i]/NR;}}' '''
statavg = subprocess.check_output(
statcmd % (prv_key, usr, repWorker, stat_f_select),
shell=True)
# print statavg
workerStatus = workerInit()
w = sum(workerStatus.values())
rt = p_95 # 95th percentile
print "+++ Testing for scale up +++"
k = 0
if rt > upperRT:
plog.write(
"%s Testing for SCALE UP, current percentile RT: %d\n"
% (ts, rt))
while rt > upperRT:
statarr = [float(i) for i in statavg.split()]
carr = [rr / 10] + [
statarr[i] for i in [0, 2, 3, 6, 7, 8, 9]
]
metrics = numpy.array(estimateMetrics(carr, w, k))
# print "Metrics",metrics
o, r = net.test([metrics], [upperRT], iprint=0)
rt = o[0][0]
print "Predicted RT: ", rt, " for workers: ", w + k
plog.write("\tPredicted RT:%d ms for %d workers\n" %
(rt, w + k))
if rt < upperRT:
break
k += 1
rt = p_95
print "--- Testing for scale down ---"
if rt < lowerRT and w > 1:
plog.write(
"%s Testing for SCALE DOWN, current percentile RT: %d\n"
% (ts, rt))
while rt < lowerRT and w > 1:
k -= 1
statarr = [float(i) for i in statavg.split()]
# print statarr
carr = [rr / 10] + [
statarr[i] for i in [0, 2, 3, 6, 7, 8, 9]
]
metrics = numpy.array(estimateMetrics(carr, w, k))
# print "Metrics",metrics
o, r = net.test([metrics], [lowerRT], iprint=0)
rt = o[0][0]
print "Predicted RT: ", rt, " for workers: ", w + k
plog.write("\tPredicted RT:%d ms for %d workers\n" %
(rt, w + k))
if rt > upperRT:
k += 1
break
if w + k == 1:
break
# log to file
rt = p_95
statarr = [float(i) for i in statavg.split()]
carr = [rr / 10
] + [statarr[i] for i in [0, 2, 3, 6, 7, 8, 9]]
# carr=[rr/10]+statarr
# mlog.write("Time:%s"%ts)
mlog.writerow([ts, p_95, avgrt, w] + carr)
metrics = numpy.array(carr)
o, r = net.test([metrics], [80], iprint=0)
pRT = o[0][0] # calculating model RT
logstr = "%s\tAverage RT: %f\tPredicted RT: %f\tNo. of workers in use: %d\tSuggested k: %d\tTimes suggested: %d\n" % (
ts, rt, pRT, w, k, timesSuggested)
print "@LOG: " + logstr
scalelog.write(logstr)
scalelog.flush()
metriclog.flush()
if k > 0:
timesSuggested += 1
if timesSuggested > 2:
timesSuggested = 0
for t in range(0, k):
addWorker(workerStatus, scalelog)
workerStatus = workerInit()
w = sum(workerStatus.values())
elif k < 0:
timesSuggested += 1
if timesSuggested > 2:
timesSuggested = 0
# for t in range(0,-k):
# print "Removing worker",t+1
removeWorker(workerStatus, scalelog) #
workerStatus = workerInit() #
w = sum(workerStatus.values())
else:
timesSuggested = 0
except Exception as e:
traceback.print_exception(*sys.exc_info())
print line
scalelog.close()
plog.close()
mlog.close()
def build_ffnet(sorted_data,training_set_size):
logging.info('starting new run! -----------------------------')
print 'defining network'
from ffnet import ffnet, imlgraph, mlgraph, loadnet, savenet
from time import time
from multiprocessing import cpu_count
import networkx
import pylab
#data_in_training2 = sorted_data[:training_set_size,10:-2].astype(float).tolist()
data_target_training2 = [[i] for i in sorted_data[:training_set_size,0].astype(float)]
new_data_in = sorted_data[:training_set_size,col_training_set[0]]
for i in col_training_set[1:]:
new_data_in = numpy.column_stack((new_data_in, sorted_data[:training_set_size,i]))
data_in_training2 = new_data_in.astype(float).tolist()
# Define net (large one)
conec = mlgraph(network_config, biases=False) #skipping first 11 cols
net = ffnet(conec)
print 'saving initialized net'
savenet(net, 'starting_net.n')
#net = loadnet('starting_net.n') # this way we can init a complex net just once
#print 'draw network'
#networkx.draw_graphviz(net.graph, prog='dot')
#pylab.show()
graph_weekly(net, sorted_data,training_set_size) # just saving a pic
logging.info('network built as: ' + str(network_config) )
print "TRAINING NETWORK..."
# that are many different training algos
#net.train_rprop(data_in_training2, data_target_training2, a=1.9, b=0.1, mimin=1e-06, mimax=15.0, xmi=0.5, maxiter=max_functions, disp=1)
###net.train_momentum(data_in_training2, data_target_training2, eta=0.2, momentum=0.1, maxiter=max_functions, disp=1)
stats = []
smallest_error = 1000
total = 0
try:
for i in xrange(min_loops,max_loops):
total += max_functions+i
if total>max_total:
break
print 'training for:',max_functions+i, "total is:", total
net.train_tnc(data_in_training2, data_target_training2, maxfun = max_functions+i, messages=1)
#net.train_rprop(data_in_training2, data_target_training2, a=1.2, b=0.5, mimin=1e-06, mimax=50.0, xmi=0.1, maxiter=max_functions*20, disp=1)
graph_weekly(net, sorted_data,training_set_size) # just saving a pic
in0, out0, s1, s2, mape_weekly_all = calc_stats(net,sorted_data,training_set_size)
stats.append((in0, out0,total, s1, s2, mape_weekly_all))
#if out0<=(biggest/1.4) and in0>.7:
#if out0<=(smallest_error/4) and in0>overfitting_threshold:
# print 'we hit overfitting threshold - breaking out early'
# break
if mape_weekly_all < smallest_error: # found a new best
smallest_error = mape_weekly_all
savenet(net, 'best_net.n')
except KeyboardInterrupt: # this way command-c just breaks out of this loop
pass
#net.train_cg(data_in_training2, data_target_training2, maxiter=max_functions, disp=1)
#net.train_genetic(data_in_training2, data_target_training2, individuals=max_population, generations=max_functions)
#net.train_bfgs(data_in_training2, data_target_training2, maxfun = max_functions, disp=1)
stats = sorted(stats, reverse=True, key=lambda x: x[1])
for i in stats:
temp_string = ''
for x in i:
temp_string += str(x) + ','
print temp_string
net = loadnet('best_net.n')
return net
def load(self, path):
self.net = loadnet(path)
#----------------------------------------------------
#################### main ###########################
#----------------------------------------------------
# load source and target array
LUT = [Getting_Arrays(LUT_file) for LUT_file in args.LUT]
if args.index:
src = np.concatenate([xLUT['index'] for xLUT in LUT], axis=0)
src = src.astype(float)
else:
src = np.concatenate([xLUT['src'] for xLUT in LUT], axis=0)
trg = np.concatenate([xLUT[LUT_var] for xLUT in LUT], axis=0)
# initialize ANN
if type(args_ANN_setup) == str:
net = ff.loadnet(args_ANN_setup)
setup = "UNKNOWN"
else:
num_inp_nodes, num_out_nodes = [src.shape[1]], [trg.shape[1]]
setup = tuple(num_inp_nodes + args_ANN_setup + num_out_nodes)
if args.full:
conec = ff.tmlgraph(setup)
else:
conec = ff.mlgraph(setup)
net = ff.ffnet(conec)
# build up a shuffled test and train array
ind = int(src.shape[0] * (1.0 - args.test_perc))
s_src, s_trg = Shuffle_2D_X(src, trg)
src_train, trg_train = s_src[:ind, :], s_trg[:ind, :]
src_test, trg_test = s_src[ind:, :], s_trg[ind:, :]