def load(info):
AssetstoreType.ESSDIVE = 'essdive'
setAssetstoreAdapter(AssetstoreType.ESSDIVE, EssDiveAssetstoreAdapter)
events.bind('assetstore.update', 'essdive', updateAssetstore)
info['apiRoot'].essdive_assetstores = EssDiveAssetstore()
def load(info):
AssetstoreType.HDFS = 'hdfs'
events.bind('assetstore.update', 'hdfs_assetstore', updateAssetstore)
events.bind('rest.post.assetstore.before', 'hdfs_assetstore',
createAssetstore)
assetstore_utilities.setAssetstoreAdapter(AssetstoreType.HDFS,
HdfsAssetstoreAdapter)
(Assetstore.createAssetstore.description.param(
'host', 'The namenode host (for HDFS type).', required=False).param(
'port', 'The namenode RPC port (for HDFS type).',
required=False).param(
'path', 'Absolute path under which new files will be stored ('
'for HDFS type).',
required=False).
param('user', 'The effective user to use when calling HDFS RPCs (for '
'HDFS type). This defaults to whatever system username the '
'Girder server process is running under.',
required=False).param(
'webHdfsPort', 'WebHDFS port for the namenode. You must enable '
'WebHDFS on your Hadoop cluster if you want to write new files '
'to the assetstore (for HDFS type).',
required=False))
info['apiRoot'].hdfs_assetstore = HdfsAssetstoreResource()
def load(self, info):
AssetstoreType.NEWT = 'newt'
setAssetstoreAdapter(AssetstoreType.NEWT, NewtAssetstoreAdapter)
events.bind('assetstore.update', 'newt', updateAssetstore)
info['apiRoot'].newt = Newt()
info['apiRoot'].newt_assetstores = NewtAssetstore()
if hasattr(girder, '__version__') and girder.__version__[0] == '3':
# Replace User._validateLogin to accept 3-letter user names
def _validateNewtLogin(login):
if '@' in login:
# Hard-code this constraint so we can always easily distinguish
# an email address from a login
raise ValidationException('Login may not contain "@".',
'login')
# For reference, girder's regex is r'^[a-z][\da-z\-\.]{3,}$'
if not re.match(r'^[a-z][\da-z_\-\.]{2,}$', login):
raise ValidationException(
'Login must be at least 3 characters, start with a letter, and may only contain '
'letters, numbers, underscores, dashes, and periods.',
'login')
User()._validateLogin = _validateNewtLogin
def load(info):
"""
Load the plugin into Girder.
:param info: a dictionary of plugin information. The name key contains the
name of the plugin according to Girder.
"""
plugin_name = info['name']
AssetstoreType.DATABASE = 'database'
setAssetstoreAdapter(AssetstoreType.DATABASE,
assetstore.DatabaseAssetstoreAdapter)
events.bind('assetstore.update', 'database_assetstore', updateAssetstore)
events.bind('rest.post.assetstore.before', 'database_assetstore',
createAssetstore)
events.bind('model.file.validate', 'database_assetstore', validateFile)
events.bind(
'model.setting.validate', 'database_assetstore',
functools.partial(base.validateSettings, plugin_name=plugin_name))
(AssetstoreResource.createAssetstore.description.param(
'dbtype', 'The database type (for Database type).',
required=False).param('dburi',
'The database URI (for Database type).',
required=False))
info['apiRoot'].database_assetstore = DatabaseAssetstoreResource()
fileResourceRoutes(info['apiRoot'].file)
File().exposeFields(level=AccessType.ADMIN, fields=base.DB_INFO_KEY)
File().exposeFields(level=AccessType.SITE_ADMIN, fields=base.DB_INFO_KEY)
# Make sure the user assetstore exists.
base._createUserAssetstore()
def load(self, info):
AssetstoreType.NEWT = 'newt'
setAssetstoreAdapter(AssetstoreType.NEWT, NewtAssetstoreAdapter)
events.bind('assetstore.update', 'newt', updateAssetstore)
info['apiRoot'].newt = Newt()
info['apiRoot'].newt_assetstores = NewtAssetstore()
def load(info):
"""
Load the plugin into Girder.
:param info: a dictionary of plugin information. The name key contains the
name of the plugin according to Girder.
"""
plugin_name = info['name']
AssetstoreType.DATABASE = 'database'
setAssetstoreAdapter(AssetstoreType.DATABASE,
assetstore.DatabaseAssetstoreAdapter)
events.bind('assetstore.update', 'database_assetstore', updateAssetstore)
events.bind('rest.post.assetstore.before', 'database_assetstore',
createAssetstore)
events.bind('model.file.validate', 'database_assetstore', validateFile)
events.bind('model.setting.validate', 'database_assetstore',
functools.partial(base.validateSettings, plugin_name=plugin_name))
(AssetstoreResource.createAssetstore.description
.param('dbtype', 'The database type (for Database type).',
required=False)
.param('dburi', 'The database URI (for Database type).',
required=False))
info['apiRoot'].database_assetstore = DatabaseAssetstoreResource()
fileResourceRoutes(info['apiRoot'].file)
File().exposeFields(level=AccessType.ADMIN, fields=base.DB_INFO_KEY)
File().exposeFields(level=AccessType.SITE_ADMIN, fields=base.DB_INFO_KEY)
# Make sure the user assetstore exists.
base._createUserAssetstore()
def load(info):
AssetstoreType.SFTP = 'sftp'
setAssetstoreAdapter(AssetstoreType.SFTP, SftpAssetstoreAdapter)
events.bind('assetstore.update', 'sftp', updateAssetstore)
events.bind('assetstore.sftp.credentials.get', 'sftp', retrieve_credentials)
info['apiRoot'].sftp_assetstores = SftpAssetstoreResource()
def load(self, info):
AssetstoreType.SFTP = 'sftp'
setAssetstoreAdapter(AssetstoreType.SFTP, SftpAssetstoreAdapter)
events.bind('assetstore.update', 'sftp', updateAssetstore)
events.bind('assetstore.sftp.credentials.get', 'sftp',
retrieve_credentials)
info['apiRoot'].sftp_assetstores = SftpAssetstoreResource()
def load(info):
AssetstoreType.NEWT = 'newt'
setAssetstoreAdapter(AssetstoreType.NEWT, NewtAssetstoreAdapter)
events.bind('assetstore.update', 'newt', updateAssetstore)
(Assetstore.createAssetstore.description
.param('machine', 'The NERSC machine name.', required=False)
.param('baseUrl', 'The NEWT API base URL.', required=False))
info['apiRoot'].newt = Newt()
info['apiRoot'].newt_assetstores = NewtAssetstore()
def load(self, info):
AssetstoreType.HDFS = 'hdfs'
events.bind('assetstore.update', 'hdfs_assetstore', updateAssetstore)
events.bind('rest.post.assetstore.before', 'hdfs_assetstore', createAssetstore)
assetstore_utilities.setAssetstoreAdapter(AssetstoreType.HDFS, HdfsAssetstoreAdapter)
(Assetstore.createAssetstore.description
.param('host', 'The namenode host (for HDFS type).', required=False)
.param('port', 'The namenode RPC port (for HDFS type).', required=False)
.param('path', 'Absolute path under which new files will be stored ('
'for HDFS type).', required=False)
.param('user', 'The effective user to use when calling HDFS RPCs (for '
'HDFS type). This defaults to whatever system username the '
'Girder server process is running under.', required=False)
.param('webHdfsPort', 'WebHDFS port for the namenode. You must enable '
'WebHDFS on your Hadoop cluster if you want to write new files '
'to the assetstore (for HDFS type).', required=False))
info['apiRoot'].hdfs_assetstore = HdfsAssetstoreResource()
def load(info):
ResonantLaboratory._cp_config['tools.staticdir.dir'] = os.path.join(
os.path.relpath(info['pluginRootDir'],
info['config']['/']['tools.staticdir.root']),
'web_client')
# Move girder app to /girder, serve sumo app from /
app = info['apiRoot'].resonantLaboratoryapp = ResonantLaboratory(info)
(
info['serverRoot'],
info['serverRoot'].girder
) = (
info['apiRoot'].resonantLaboratoryapp,
info['serverRoot']
)
info['serverRoot'].api = info['serverRoot'].girder.api
# Expose versioning endpoint
info['apiRoot'].system.route('GET', ('resonantLaboratoryVersion', ),
app.versioning.versionNumber)
# Expose anonymous access endpoints
info['apiRoot'].item.route('POST', ('anonymousAccess', 'privateItem'),
app.anonymousAccess.getOrMakePrivateItem)
info['apiRoot'].item.route('POST', ('anonymousAccess', 'scratchItem'),
app.anonymousAccess.makeScratchItem)
info['apiRoot'].folder.route('GET', ('anonymousAccess', 'privateFolder'),
app.anonymousAccess.getOrMakePrivateFolder)
info['apiRoot'].folder.route('GET', ('anonymousAccess', 'publicFolder'),
app.anonymousAccess.getOrMakePublicFolder)
info['apiRoot'].item.route('POST', (':id', 'anonymousAccess', 'togglePublic'),
app.anonymousAccess.togglePublic)
info['apiRoot'].item.route('POST', (':id', 'anonymousAccess', 'updateScratch'),
app.anonymousAccess.updateScratchItem)
info['apiRoot'].item.route('GET', (':id', 'anonymousAccess', 'info'),
app.anonymousAccess.itemInfo)
info['apiRoot'].item.route('GET', ('anonymousAccess', 'validateScratchItems'),
app.anonymousAccess.validateScratchItems)
info['apiRoot'].item.route('PUT', ('anonymousAccess', 'adoptScratchItems'),
app.anonymousAccess.adoptScratchItems)
# Expose dataset endpoints
info['apiRoot'].item.route('POST', (':id', 'dataset'),
app.datasetItem.setupDataset)
info['apiRoot'].item.route('POST', (':id', 'dataset', 'inferSchema'),
app.datasetItem.inferSchema)
info['apiRoot'].item.route('POST', (':id', 'dataset', 'getHistograms'),
app.datasetItem.getHistograms)
# Expose project endpoint
info['apiRoot'].item.route('POST', (':id', 'project'),
app.projectItem.setupProject)
# Install "semantic" download adapters into Girder's table of adapters.
setAssetstoreAdapter(AssetstoreType.FILESYSTEM, semantic_access(FilesystemAssetstoreAdapter))
setAssetstoreAdapter(AssetstoreType.GRIDFS, semantic_access(GridFsAssetstoreAdapter))
setAssetstoreAdapter(AssetstoreType.DATABASE, semantic_access(DatabaseAssetstoreAdapter))
def fakeAdapter(db):
assetstore_utilities.setAssetstoreAdapter('fake', FakeAdapter)
yield
assetstore_utilities.removeAssetstoreAdapter('fake')
def fakeAdapter(db):
assetstore_utilities.setAssetstoreAdapter('fake', FakeAdapter)
yield
assetstore_utilities.removeAssetstoreAdapter('fake')
def load(self, info):
# TODO allow a file to be stored in multiple tape archive assetstores
setAssetstoreAdapter(AssetstoreType.FILESYSTEM, TarSupportAdapter)
info['apiRoot'].assetstore.route('POST', (':id', 'tar_export'), _exportTar)
info['apiRoot'].folder.route('POST', (':id', 'tar_import'), _importTar)
def _importHdf5(self, assetstore, folder, path, progress):
user = self.getCurrentUser()
setAssetstoreAdapter(AssetstoreType.FILESYSTEM, Hdf5SupportAdapter)
adapter = getAssetstoreAdapter(assetstore)
with ProgressContext(progress, user=user, title="Importing data") as ctx:
adapter._importHdf5(path, folder, ctx, user)
