#silence output and run API filter call
with helpers.no_console_output():
script07_api_call(curDir, os.path.join(curDir, outFile),
genelist, filtervals['opt_e_keyword_field'],
negative_query, joinedPrevFile)
outheader = []
outtext = []
outtextmap = []
outheadermap = [] #for column defs
#get number of lines in the file using custom function
numresults = -1
try: #results = file line count minus header
numresults = helpers.get_linecount(os.path.join(curDir, outFile)) - 1
except:
numresults = -1
try:
with open(os.path.join(curDir, outFile), 'r') as ifff:
outheader = ifff.readline().strip().split('\t')
#only store the first RESULTLIMIT results
for i in range(0, RESULTLIMIT):
outtext.append(ifff.readline().strip().split('\t'))
except:
pass #no results found
#read the new (old) results file and return the data
#parse out the data from the output file and return it in JSON
#format changed as of tag v0.5 to export this as a map/dict
#which is the easiest way for angular to produce a sortable table
outheader = []
outtext = []
outtextmap = []
outheadermap = [] #for column defs
#get number of lines in the file using custom function
numresults = -1
try:
#result count = file line count minus header
numresults = helpers.get_linecount('%s/%s' % (curDir, outFile)) - 1
except:
numresults = -1
try:
with open('%s/%s' % (curDir, outFile), 'r') as ifff:
outheader = ifff.readline().strip().split('\t')
#only store the first RESULTLIMIT results
for i in range(0, RESULTLIMIT):
outtext.append(ifff.readline().strip().split('\t'))
except:
pass #no results found
#read the new (old) results file and return the data
#parse out the data from the output file and return it in JSON
#format changed as of tag v0.5 to export this as a map/dict
#which is the easiest way for angular to produce a sortable table
outheader = []
outtext = []
outtextmap = []
outheadermap = [] #for column defs
#get number of lines in the file using custom function
numresults = -1
try:
#result count = file line count minus header
numresults = helpers.get_linecount('%s/%s' % (curDir, outFile)) - 1
except:
numresults = -1
try:
with open('%s/%s' % (curDir, outFile), 'r') as ifff:
outheader = ifff.readline().strip().split('\t')
#only store the first RESULTLIMIT results
for i in range(0, RESULTLIMIT):
outtext.append(ifff.readline().strip().split('\t'))
except:
pass #no results found
for result in outtext:
#silence output and run API filter call
with helpers.no_console_output():
script07_api_call(curDir, os.path.join(curDir, outFile), genelist,
filtervals['opt_e_keyword_field'],
negative_query, joinedPrevFile)
outheader = []
outtext = []
outtextmap = []
outheadermap = [] #for column defs
#get number of lines in the file using custom function
numresults = -1
try: #results = file line count minus header
numresults = helpers.get_linecount(os.path.join(curDir, outFile)) - 1
except:
numresults = -1
try:
with open(os.path.join(curDir, outFile), 'r') as ifff:
outheader = ifff.readline().strip().split('\t')
#only store the first RESULTLIMIT results
for i in range(0, RESULTLIMIT):
outtext.append(ifff.readline().strip().split('\t'))
except:
pass #no results found
