Python ReachProcessor._get_db_refs Examples

Example #1

File: test_reach.py Project: steppi/indra

def test_get_db_refs_up_non_human():
    entity_term = {
        'text': 'MYC',
        'xrefs': [{'namespace': 'uniprot', 'id': 'Q9MZT7',
                   'object-type': 'db-reference'}]
        }
    db_refs = ReachProcessor._get_db_refs(entity_term)
    assert db_refs == {'UP': 'Q9MZT7', 'TEXT': 'MYC'}, db_refs

Example #2

File: test_reach.py Project: johnbachman/indra

def test_get_db_refs_up_non_human():
    entity_term = {
        'text': 'MYC',
        'xrefs': [{'namespace': 'uniprot', 'id': 'Q9MZT7',
                   'object-type': 'db-reference'}]
        }
    name, db_refs = ReachProcessor._get_db_refs(entity_term)
    assert name == 'MYC', name
    assert db_refs == {'UP': 'Q9MZT7', 'TEXT': 'MYC'}, db_refs

Example #3

File: test_reach.py Project: steppi/indra

def test_get_db_refs_up_human():
    entity_term = {
        'text': 'Ikaros',
        'xrefs': [{'namespace': 'uniprot', 'id': 'Q13422',
                   'object-type': 'db-reference'}]
        }
    db_refs = ReachProcessor._get_db_refs(entity_term)
    assert db_refs == {'UP': 'Q13422', 'HGNC': '13176',
                       'TEXT': 'Ikaros', 'EGID': '10320'}, db_refs

Example #4

File: test_reach.py Project: johnbachman/indra

def test_get_db_refs_up_human():
    entity_term = {
        'text': 'Ikaros',
        'xrefs': [{'namespace': 'uniprot', 'id': 'Q13422',
                   'object-type': 'db-reference'}]
        }
    name, db_refs = ReachProcessor._get_db_refs(entity_term)
    assert name == 'IKZF1', name
    assert db_refs == {'UP': 'Q13422', 'HGNC': '13176',
                       'TEXT': 'Ikaros'}, db_refs