def doMakoLogin(self,subject=None,visit=None):
self.jsonpath = os.path.join(SUBJS,subject,"%s_experiment_info.json"%subject)
if os.path.exists(self.jsonpath):
self.json = load_json(self.jsonpath)
else:
self.json = get_json(subject)
#self.json['subject_id'] = subject
self.json['time'] = time.ctime() ## record new login time
visit = [v['active'] for v in self.json['Protocol']].index(True) # auto-get last open tab
### if no sessiondir exists, create it
if not os.path.exists(os.path.join(SUBJS,subject)):
self.history = createSubDir(subject) + self.history
if not os.path.exists(os.path.join(SUBJS,"%s/session%s/"%(subject,visit))):
history = makeSession(subject,visit) # returns history
self.history = history + self.history
self.setTab(visit) # activates the tab
return self.renderAndSave() # saves the json, and renders the page
def doLogin(self, subject=None, visit=None):
self.subject = subject
self.visit = visit
date = data.getDateStr()[:-5]
with open(os.path.join(HOME, "index.html")) as fp:
msg = fp.readlines()
with open(os.path.join(HOME, "historybar.html")) as fp:
hist = fp.readlines()
msg += hist
## if no subject/sessiondir exists, create it - also if the mask and study ref exist lets make fakedata
if not os.path.exists(os.path.join(SUBJS, subject)):
self.history = createSubDir(subject) + self.history
if (
os.path.exists(os.path.join(SUBJS, subject, "mask", "%s_roi.nii" % subject))
and os.path.exists(os.path.join(SUBJS, subject, "xfm", "%s_study_ref.nii" % subject))
and not os.path.exists(os.path.join(SUBJS, subject, "run1.nii"))
):
pass
# self.history = makeFakeData(subject) +self.history
if not os.path.exists(os.path.join(SUBJS, "%s/session%s/" % (subject, visit))):
history = makeSession(subject, visit) # returns history
self.history = history + self.history
msg += self.history
msg += """</div></div>"""
subject_info = """
<div style="background-color: white; text-align: left; padding: 0px 10px 10px 10px">
<p>
<br><b>Subject:</b> %s
<br><b>Visit #:</b> %s
</p>
<p>
<form method="post" action="formHandler">
<p><div style="padding: 10px 10px 10px 10px">Run #:
<input type="text" name="run" value=%s
size="10" maxlength="40"/></div></p>
<p><b>Tests:</b>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Test Display"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Test Buttons"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Test Scanner Trigger"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Test Letter Sounds"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Test Bird Sounds"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Start InfoClient Test"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Check InfoClient"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="End InfoClient"></div>
</p>
<p><b>Murfi:</b>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Start Murfi"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="End Murfi"></div></p>
<p><b>Fake Data:</b>
<br><div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Serve"></div>
<div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="End Serve"></div></p>
<p><b>Stimulus:</b>
<br><div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Stimulus"></p>
<br><div style="padding: 10px 10px 10px 10px"><input type="submit" name="button" value="Placebo Stimulus"></p>
</form>
</p>
<div id="placeholder" style="width:600px;height:300px;"></div>
<p>
<input class="dataUpdate" type="button" value="Poll for data">
</p>
<script type="text/javascript">
$(function () {
var options = {
lines: { show: true },
points: { show: true },
xaxis: { tickDecimals: 0, tickSize: 1 }
};
var data = [];
var placeholder = $("#placeholder");
$.plot(placeholder, data, options);
// fetch one series, adding to what we got
var alreadyFetched = {};
// initiate a recurring data update
$("input.dataUpdate").click(function () {
// reset data
data = [];
alreadyFetched = {};
$.plot(placeholder, data, options);
var iteration = 0;
function fetchData() {
++iteration;
data = []
function onDataReceived(series) {
// we get all the data in one go, if we only got partial
// data, we could merge it with what we already got
//if (!alreadyFetched[series.label]) {
//alreadyFetched[series.label] = true;
//data.push(series);
//}
data.push(series);
$.plot($("#placeholder"), data, options);
}
$.ajax({
// usually, we'll just call the same URL, a script
// connected to a database, but in this case we only
// have static example files so we need to modify the
// URL
url: "subjects/%s/session%s/data/%s_%s_run_%03d_active.json",
method: 'GET',
dataType: 'json',
success: onDataReceived
});
$.ajax({
// usually, we'll just call the same URL, a script
// connected to a database, but in this case we only
// have static example files so we need to modify the
// URL
url: "subjects/%s/session%s/data/%s_%s_run_%03d_reference.json",
method: 'GET',
dataType: 'json',
success: onDataReceived
});
if (iteration < 63)
setTimeout(fetchData, 5000);
else {
data = [];
alreadyFetched = {};
}
}
setTimeout(fetchData, 1000);
});
});
</script>
""" % (
subject,
visit,
self.run,
subject,
visit,
subject,
date,
int(self.run),
subject,
visit,
subject,
date,
int(self.run),
)
msg += subject_info
with open(os.path.join(HOME, "footer.html")) as fp:
foot = fp.readlines()
return msg + foot ### end: def doLogin()
