Python mergeInputs Examples

Programming Language: Python

Namespace/Package Name: makePeakInput

Method/Function: mergeInputs

Examples at hotexamples.com: 3

Python mergeInputs - 3 examples found. These are the top rated real world Python examples of makePeakInput.mergeInputs extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: CONTROL.py Project: combiochem/ResearchScripts

import makePeakInput
import subprocess

#makePeakInput.makePeakInputQ('siPeaks.conf', 20)
#makePeakInput.mergeInputs('siPeaks.conf', 20)
#makePeakInput.makePeakInputQ('siDegradome.conf', 4)
makePeakInput.mergeInputs('siDegradome.conf', 4)

#tcc = 'chr1:1:1102538:1103319'
#subprocess.Popen(['qsub', '-V', '-cwd', '-e', 'test', '-o', 'test', 'q.sh', '%s' % tcc, 'agoProfile.conf', '200']).wait()
#qsub -V -cwd -o test -e test q.sh chr1:1:1102538:1103319 agoProfile.conf 20

Example #2

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File: CONTROL.py Project: sknyx/ResearchScripts

#makePeakInput.makePeakInputQ('ovarySmall.conf', 20)
#makePeakInput.mergeInputs('ovarySmall.conf', 20)

#makePeakInput.makePeakInputQ('ovaryDeg.conf', 3)
#makePeakInput.mergeInputs('ovaryDeg.conf', 3)

#makePeakInput.makePeakInputQ('kidneySmall.conf', 20)
#makePeakInput.mergeInputs('kidneySmall.conf', 20)

#makePeakInput.makePeakInputQ('kidneyDeg.conf', 2)
#makePeakInput.mergeInputs('kidneyDeg.conf', 3)

#makePeakInput.makePeakInputQ('siPeaks.conf', 20)
#makePeakInput.mergeInputs('siPeaks.conf', 20)

#makePeakInput.makePeakInputQ('siDegradome.conf', 4)
#makePeakInput.mergeInputs('siDegradome.conf', 4)

#tcc = 'chr1:1:1102538:1103319'
#subprocess.Popen(['qsub', '-V', '-cwd', '-e', 'test', '-o', 'test', 'q.sh', '%s' % tcc, 'agoProfile.conf', '200']).wait()
#qsub -V -cwd -o test -e test q.sh chr1:1:1102538:1103319 agoProfile.conf 20

import sys

(sName, confBaseName, makeChoice, lowestE) = sys.argv

if makeChoice == '1':
    makePeakInput.makePeakInputQ(confBaseName, int(lowestE))
else:
    makePeakInput.mergeInputs(confBaseName, int(lowestE))

Example #3

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File: CONTROL.py Project: JasonAng/ResearchScripts

#makePeakInput.makePeakInputQ('ovarySmall.conf', 20)
#makePeakInput.mergeInputs('ovarySmall.conf', 20)

#makePeakInput.makePeakInputQ('ovaryDeg.conf', 3)
#makePeakInput.mergeInputs('ovaryDeg.conf', 3)

#makePeakInput.makePeakInputQ('kidneySmall.conf', 20)
#makePeakInput.mergeInputs('kidneySmall.conf', 20)

#makePeakInput.makePeakInputQ('kidneyDeg.conf', 2)
#makePeakInput.mergeInputs('kidneyDeg.conf', 3)

#makePeakInput.makePeakInputQ('siPeaks.conf', 20)
#makePeakInput.mergeInputs('siPeaks.conf', 20)

#makePeakInput.makePeakInputQ('siDegradome.conf', 4)
#makePeakInput.mergeInputs('siDegradome.conf', 4)

#tcc = 'chr1:1:1102538:1103319'
#subprocess.Popen(['qsub', '-V', '-cwd', '-e', 'test', '-o', 'test', 'q.sh', '%s' % tcc, 'agoProfile.conf', '200']).wait()
#qsub -V -cwd -o test -e test q.sh chr1:1:1102538:1103319 agoProfile.conf 20

import sys

(sName, confBaseName, makeChoice, lowestE) = sys.argv

if makeChoice == '1':
        makePeakInput.makePeakInputQ(confBaseName, int(lowestE))
else:
        makePeakInput.mergeInputs(confBaseName, int(lowestE))