Python write_bem_surface Examples

Example #1

File: test_surface.py Project: starzynski/mne-python

def test_io_bem_surfaces():
    """Testing reading of bem surfaces
    """
    surf = read_bem_surfaces(fname, add_geom=True)
    surf = read_bem_surfaces(fname, add_geom=False)
    print "Number of surfaces : %d" % len(surf)

    write_bem_surface('bem_surf.fif', surf[0])
    surf_read = read_bem_surfaces('bem_surf.fif', add_geom=False)

    for key in surf[0].keys():
        assert_array_almost_equal(surf[0][key], surf_read[0][key])

Example #2

File: test_surface.py Project: starzynski/mne-python

def test_io_bem_surfaces():
    """Testing reading of bem surfaces
    """
    surf = read_bem_surfaces(fname, add_geom=True)
    surf = read_bem_surfaces(fname, add_geom=False)
    print "Number of surfaces : %d" % len(surf)

    write_bem_surface('bem_surf.fif', surf[0])
    surf_read = read_bem_surfaces('bem_surf.fif', add_geom=False)

    for key in surf[0].keys():
        assert_array_almost_equal(surf[0][key], surf_read[0][key])

Example #3

File: test_surface.py Project: pelednoam/mne-python

def test_io_bem_surfaces():
    """Test reading of bem surfaces
    """
    tempdir = _TempDir()
    surf = read_bem_surfaces(fname, add_geom=True)
    surf = read_bem_surfaces(fname, add_geom=False)
    print("Number of surfaces : %d" % len(surf))

    write_bem_surface(op.join(tempdir, 'bem_surf.fif'), surf[0])
    surf_read = read_bem_surfaces(op.join(tempdir, 'bem_surf.fif'),
                                  add_geom=False)

    for key in surf[0].keys():
        assert_array_almost_equal(surf[0][key], surf_read[0][key])

Example #4

File: mne_surf2bem.py Project: bibekjoshi54/grasp-lift-eeg-cat-dog-solution-updated

def run():
    from mne.commands.utils import get_optparser

    parser = get_optparser(__file__)

    parser.add_option("-s",
                      "--surf",
                      dest="surf",
                      help="Surface in Freesurfer format",
                      metavar="FILE")
    parser.add_option("-f",
                      "--fif",
                      dest="fif",
                      help="FIF file produced",
                      metavar="FILE")
    parser.add_option("-i",
                      "--id",
                      dest="id",
                      default=4,
                      help=("Surface Id (e.g. 4 sur head surface)"))

    options, args = parser.parse_args()

    if options.surf is None:
        parser.print_help()
        sys.exit(1)

    print("Converting %s to BEM FIF file." % options.surf)
    points, tris = mne.read_surface(options.surf)
    points *= 1e-3
    surf = dict(coord_frame=5,
                id=int(options.id),
                nn=None,
                np=len(points),
                ntri=len(tris),
                rr=points,
                sigma=1,
                tris=tris)
    mne.write_bem_surface(options.fif, surf)

Example #5

File: mne_surf2bem.py Project: BushraR/mne-python

def run():
    from mne.commands.utils import get_optparser

    parser = get_optparser(__file__)

    parser.add_option("-s", "--surf", dest="surf",
                      help="Surface in Freesurfer format", metavar="FILE")
    parser.add_option("-f", "--fif", dest="fif",
                      help="FIF file produced", metavar="FILE")
    parser.add_option("-i", "--id", dest="id", default=4,
                      help=("Surface Id (e.g. 4 sur head surface)"))

    options, args = parser.parse_args()

    if options.surf is None:
        parser.print_help()
        sys.exit(1)

    print("Converting %s to BEM FIF file." % options.surf)
    points, tris = mne.read_surface(options.surf)
    points *= 1e-3
    surf = dict(coord_frame=5, id=int(options.id), nn=None, np=len(points),
                ntri=len(tris), rr=points, sigma=1, tris=tris)
    mne.write_bem_surface(options.fif, surf)

Example #6

File: mne_surf2bem.py Project: jaeilepp/eggie

import sys

import mne

if __name__ == '__main__':

    from mne.commands.utils import get_optparser

    parser = get_optparser(__file__)

    parser.add_option("-s", "--surf", dest="surf",
                    help="Surface in Freesurfer format", metavar="FILE")
    parser.add_option("-f", "--fif", dest="fif",
                    help="FIF file produced", metavar="FILE")
    parser.add_option("-i", "--id", dest="id", default=4,
                    help=("Surface Id (e.g. 4 sur head surface)"))

    options, args = parser.parse_args()

    if options.surf is None:
        parser.print_help()
        sys.exit(1)

    print("Converting %s to BEM FIF file." % options.surf)

    points, tris = mne.read_surface(options.surf)
    points *= 1e-3
    surf = dict(coord_frame=5, id=int(options.id), nn=None, np=len(points),
                ntri=len(tris), rr=points, sigma=1, tris=tris)
    mne.write_bem_surface(options.fif, surf)