def put(self, local, remote, use_sudo=False):
if self.conn.command_cwds and not remote.startswith(("/", "~")):
remote = self.conn.command_cwds[-1].rstrip("/'") + "/" + remote
if use_sudo:
filename = "/tmp/" + Random.hex(20)
self.conn.put(File(local).abspath, filename)
self.sudo("cp " + filename + " " + remote)
self.sudo("rm " + filename)
else:
self.conn.put(File(local).abspath, remote)
def _scan_database(self):
# GET ALL RELATIONS
raw_relations = self.db.query(
"""
SELECT
table_schema,
table_name,
referenced_table_schema,
referenced_table_name,
referenced_column_name,
constraint_name,
column_name,
ordinal_position
FROM
information_schema.key_column_usage
WHERE
referenced_column_name IS NOT NULL
""",
param=self.settings.database,
)
if not raw_relations:
Log.error("No relations in the database")
for r in self.settings.add_relations:
try:
lhs, rhs = map(strings.trim, r.split("->"))
lhs = lhs.split(".")
if len(lhs) == 2:
lhs = [self.settings.database.schema] + lhs
rhs = rhs.split(".")
if len(rhs) == 2:
rhs = [self.settings.database.schema] + rhs
to_add = Data(
ordinal_position=1, # CAN ONLY HANDLE 1-COLUMN RELATIONS
table_schema=lhs[0],
table_name=lhs[1],
column_name=lhs[2],
referenced_table_schema=rhs[0],
referenced_table_name=rhs[1],
referenced_column_name=rhs[2],
)
# CHECK IF EXISTING
if jx.filter(raw_relations, {"eq": to_add}):
Log.note("Relation {{relation}} already exists",
relation=r)
continue
to_add.constraint_name = Random.hex(20)
raw_relations.append(to_add)
except Exception as e:
Log.error("Could not parse {{line|quote}}", line=r, cause=e)
relations = jx.select(
raw_relations,
[
{
"name": "constraint.name",
"value": "constraint_name"
},
{
"name": "table.schema",
"value": "table_schema"
},
{
"name": "table.name",
"value": "table_name"
},
{
"name": "column.name",
"value": "column_name"
},
{
"name": "referenced.table.schema",
"value": "referenced_table_schema"
},
{
"name": "referenced.table.name",
"value": "referenced_table_name"
},
{
"name": "referenced.column.name",
"value": "referenced_column_name"
},
{
"name": "ordinal_position",
"value": "ordinal_position"
},
],
)
# GET ALL TABLES
raw_tables = self.db.query("""
SELECT
t.table_schema,
t.table_name,
c.constraint_name,
c.constraint_type,
k.column_name,
k.ordinal_position
FROM
information_schema.tables t
LEFT JOIN
information_schema.table_constraints c on c.table_name=t.table_name AND c.table_schema=t.table_schema and (constraint_type='UNIQUE' or constraint_type='PRIMARY KEY')
LEFT JOIN
information_schema.key_column_usage k on k.constraint_name=c.constraint_name AND k.table_name=t.table_name and k.table_schema=t.table_schema
ORDER BY
t.table_schema,
t.table_name,
c.constraint_name,
k.ordinal_position,
k.column_name
""")
# ORGANIZE, AND PICK ONE UNIQUE CONSTRAINT FOR LINKING
tables = UniqueIndex(keys=["name", "schema"])
for t, c in jx.groupby(raw_tables, ["table_name", "table_schema"]):
c = wrap(list(c))
best_index = Null
is_referenced = False
is_primary = False
for g, w in jx.groupby(c, "constraint_name"):
if not g.constraint_name:
continue
w = list(w)
ref = False
for r in relations:
if (r.table.name == t.table_name
and r.table.schema == t.table_schema
and r.constraint.name == g.constraint_name):
ref = True
is_prime = w[0].constraint_type == "PRIMARY"
reasons_this_one_is_better = [
best_index == None, # WE DO NOT HAVE A CANDIDATE YET
is_prime
and not is_primary, # PRIMARY KEYS ARE GOOD TO HAVE
is_primary == is_prime and ref and
not is_referenced, # REFERENCED UNIQUE TUPLES ARE GOOD TOO
is_primary == is_prime and ref == is_referenced and len(w)
< len(best_index), # THE SHORTER THE TUPLE, THE BETTER
]
if any(reasons_this_one_is_better):
is_primary = is_prime
is_referenced = ref
best_index = w
tables.add({
"name": t.table_name,
"schema": t.table_schema,
"id": [b.column_name for b in best_index],
})
fact_table = tables[self.settings.fact_table,
self.settings.database.schema]
ids_table = {
"alias": "t0",
"name": "__ids__",
"schema": fact_table.schema,
"id": fact_table.id,
}
relations.extend(
wrap({
"constraint": {
"name": "__link_ids_to_fact_table__"
},
"table": ids_table,
"column": {
"name": c
},
"referenced": {
"table": fact_table,
"column": {
"name": c
}
},
"ordinal_position": i,
}) for i, c in enumerate(fact_table.id))
tables.add(ids_table)
# GET ALL COLUMNS
raw_columns = self.db.query("""
SELECT
column_name,
table_schema,
table_name,
ordinal_position,
data_type
FROM
information_schema.columns
""")
reference_only_tables = [
r.split(".")[0] for r in self.settings.reference_only
if len(r.split(".")) == 2
]
reference_all_tables = [
r.split(".")[0] for r in self.settings.reference_only
if len(r.split(".")) == 1
]
foreign_column_table_schema_triples = {(r.column.name, r.table.name,
r.table.schema)
for r in relations}
referenced_column_table_schema_triples = {(
r.referenced.column.name,
r.referenced.table.name,
r.referenced.table.schema,
)
for r in relations}
related_column_table_schema_triples = (
foreign_column_table_schema_triples
| referenced_column_table_schema_triples)
columns = UniqueIndex(["column.name", "table.name", "table.schema"])
for c in raw_columns:
if c.table_name in reference_only_tables:
if c.table_name + "." + c.column_name in self.settings.reference_only:
include = True
reference = True
foreign = False
elif c.column_name in tables[(c.table_name,
c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = False
foreign = False
else:
include = False
reference = False
foreign = False
elif c.table_name in reference_all_tables:
# TABLES USED FOR REFERENCE, NO NESTED DOCUMENTS EXPECTED
if c.column_name in tables[(c.table_name, c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = True
foreign = False
elif (
c.column_name,
c.table_name,
c.table_schema,
) in foreign_column_table_schema_triples:
include = False
reference = False
foreign = True
else:
include = True
reference = False
foreign = False
elif c.column_name in tables[(c.table_name, c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = False
foreign = False
elif (
c.column_name,
c.table_name,
c.table_schema,
) in foreign_column_table_schema_triples:
include = False
reference = False
foreign = True
elif (
c.column_name,
c.table_name,
c.table_schema,
) in referenced_column_table_schema_triples:
include = self.settings.show_foreign_keys
reference = False
foreign = False
else:
include = True
reference = False
foreign = False
rel = {
"column": {
"name": c.column_name,
"type": c.data_type
},
"table": {
"name": c.table_name,
"schema": c.table_schema
},
"ordinal_position": c.ordinal_position,
"is_id": c.column_name
in tables[(c.table_name, c.table_schema)].id,
"include": include, # TRUE IF THIS COLUMN IS OUTPUTTED
"reference":
reference, # TRUE IF THIS COLUMN REPRESENTS THE ROW
"foreign":
foreign, # TRUE IF THIS COLUMN POINTS TO ANOTHER ROW
}
columns.add(rel)
# ITERATE OVER ALL PATHS
todo = FlatList()
output_columns = FlatList()
nested_path_to_join = {}
all_nested_paths = [["."]]
def follow_paths(position, path, nested_path, done_relations,
no_nested_docs):
if position.name in self.settings.exclude:
return
if self.path_not_allowed(path):
return
if DEBUG:
Log.note("Trace {{path}}", path=path)
if position.name != "__ids__":
# USED TO CONFIRM WE CAN ACCESS THE TABLE (WILL THROW ERROR WHEN IF IT FAILS)
self.db.query(
ConcatSQL(
SQL_SELECT,
SQL_STAR,
SQL_FROM,
quote_column(position.schema, position.name),
SQL_LIMIT,
SQL_ONE,
))
if position.name in reference_all_tables:
no_nested_docs = True
if position.name in reference_only_tables:
return
curr_join_list = copy(nested_path_to_join[nested_path[0]])
###############################################################################
# INNER OBJECTS
###############################################################################
referenced_tables = list(
sort_using_key(
jx.groupby(
jx.filter(
relations,
{
"eq": {
"table.name": position.name,
"table.schema": position.schema,
}
},
),
"constraint.name",
),
key=lambda p: first(p[1]).column.name,
))
for g, constraint_columns in referenced_tables:
g = unwrap(g)
constraint_columns = deepcopy(constraint_columns)
if g["constraint.name"] in done_relations:
continue
if any(cc for cc in constraint_columns
if cc.referenced.table.name in self.settings.exclude):
continue
done_relations.add(g["constraint.name"])
many_to_one_joins = nested_path_to_join[nested_path[0]]
index = len(many_to_one_joins)
alias = "t" + text(index)
for c in constraint_columns:
c.referenced.table.alias = alias
c.table = position
many_to_one_joins.append({
"join_columns": constraint_columns,
"path": path,
"nested_path": nested_path,
})
# HANDLE THE COMMON *id SUFFIX
name = []
for cname, tname in zip(
constraint_columns.column.name,
constraint_columns.referenced.table.name,
):
if cname.startswith(tname):
name.append(tname)
elif cname.endswith("_id"):
name.append(cname[:-3])
else:
name.append(cname)
relation_string = many_to_one_string(constraint_columns[0])
step = "/".join(name)
if len(constraint_columns) == 1:
step = self.name_relations.get(relation_string, step)
referenced_column_path = concat_field(path, step)
if self.path_not_allowed(referenced_column_path):
continue
if referenced_column_path in reference_only_tables:
continue
col_pointer_name = relative_field(referenced_column_path,
nested_path[0])
for col in columns:
if (col.table.name
== constraint_columns[0].referenced.table.name
and col.table.schema
== constraint_columns[0].referenced.table.schema):
col_full_name = concat_field(
col_pointer_name, literal_field(col.column.name))
if (col.is_id and len(nested_path) == 1
and col.table.name == fact_table.name
and col.table.schema == fact_table.schema):
# ALWAYS SHOW THE ID OF THE FACT
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
True,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name,
})
elif col.column.name == constraint_columns[
0].column.name:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
if self.settings.show_foreign_keys else None,
})
elif col.is_id:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
if self.settings.show_foreign_keys else None,
})
elif col.reference:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_pointer_name
if not self.settings.show_foreign_keys else
col_full_name, # REFERENCE FIELDS CAN REPLACE THE WHOLE OBJECT BEING REFERENCED
})
elif col.include:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name,
})
if position.name in reference_only_tables:
continue
todo.append(
Data(
position=copy(constraint_columns[0].referenced.table),
path=referenced_column_path,
nested_path=nested_path,
done_relations=copy(done_relations),
no_nested_docs=no_nested_docs,
))
###############################################################################
# NESTED OBJECTS
###############################################################################
if not no_nested_docs:
nesting_tables = list(
sort_using_key(
jx.groupby(
jx.filter(
relations,
{
"eq": {
"referenced.table.name": position.name,
"referenced.table.schema":
position.schema,
}
},
),
"constraint.name",
),
key=lambda p: [(r.table.name, r.column.name)
for r in [first(p[1])]][0],
))
for g, constraint_columns in nesting_tables:
g = unwrap(g)
constraint_columns = deepcopy(constraint_columns)
if g["constraint.name"] in done_relations:
continue
done_relations.add(g["constraint.name"])
many_table = set(constraint_columns.table.name)
if not (many_table - self.settings.exclude):
continue
relation_string = one_to_many_string(constraint_columns[0])
step = "/".join(many_table)
if len(constraint_columns) == 1:
step = self.name_relations.get(relation_string, step)
referenced_column_path = concat_field(path, step)
if self.path_not_allowed(referenced_column_path):
continue
new_nested_path = [referenced_column_path] + nested_path
all_nested_paths.append(new_nested_path)
if referenced_column_path in nested_path_to_join:
Log.error(
"{{path}} already exists, try adding entry to name_relations",
path=referenced_column_path,
)
one_to_many_joins = nested_path_to_join[
referenced_column_path] = copy(curr_join_list)
index = len(one_to_many_joins)
alias = "t" + text(index)
for c in constraint_columns:
c.table.alias = alias
c.referenced.table = position
one_to_many_joins.append(
set_default(
{},
g,
{
"children": True,
"join_columns": constraint_columns,
"path": path,
"nested_path": nested_path,
},
))
for col in columns:
if (col.table.name == constraint_columns[0].table.name
and col.table.schema
== constraint_columns[0].table.schema):
col_full_name = join_field(
split_field(referenced_column_path)
[len(split_field(new_nested_path[0])):] +
[literal_field(col.column.name)])
if col.column.name == constraint_columns[
0].column.name:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if
self.settings.show_foreign_keys else None,
})
elif col.is_id:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if
self.settings.show_foreign_keys else None,
})
else:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if col.include else None,
})
todo.append(
Data(
position=constraint_columns[0].table,
path=referenced_column_path,
nested_path=new_nested_path,
done_relations=copy(done_relations),
no_nested_docs=no_nested_docs,
))
path = "."
nested_path = [path]
nested_path_to_join["."] = [{
"path":
path,
"join_columns": [{
"referenced": {
"table": ids_table
}
}],
"nested_path":
nested_path,
}]
todo.append(
Data(
position=ids_table,
path=path,
nested_path=nested_path,
done_relations=set(),
no_nested_docs=False,
))
while todo:
item = todo.pop(0)
follow_paths(**item)
self.all_nested_paths = all_nested_paths
self.nested_path_to_join = nested_path_to_join
self.columns = output_columns
def _install_es(self, gigabytes):
volumes = self.instance.markup.drives
if not fabric_files.exists("/usr/local/elasticsearch"):
with cd("/home/ec2-user/"):
run("mkdir -p temp")
if not File(LOCAL_JRE).exists:
Log.error("Expecting {{file}} on manager to spread to ES instances", file=LOCAL_JRE)
with cd("/home/ec2-user/temp"):
run('rm -f '+JRE)
put("resources/"+JRE, JRE)
sudo("rpm -i "+JRE)
sudo("alternatives --install /usr/bin/java java /usr/java/default/bin/java 20000")
run("export JAVA_HOME=/usr/java/default")
with cd("/home/ec2-user/"):
run('wget https://download.elasticsearch.org/elasticsearch/elasticsearch/elasticsearch-1.7.1.tar.gz')
run('tar zxfv elasticsearch-1.7.1.tar.gz')
sudo('mkdir /usr/local/elasticsearch')
sudo('cp -R elasticsearch-1.7.1/* /usr/local/elasticsearch/')
with cd('/usr/local/elasticsearch/'):
# BE SURE TO MATCH THE PLUGLIN WITH ES VERSION
# https://github.com/elasticsearch/elasticsearch-cloud-aws
sudo('bin/plugin -install elasticsearch/elasticsearch-cloud-aws/2.7.1')
#REMOVE THESE FILES, WE WILL REPLACE THEM WITH THE CORRECT VERSIONS AT THE END
sudo("rm -f /usr/local/elasticsearch/config/elasticsearch.yml")
sudo("rm -f /usr/local/elasticsearch/bin/elasticsearch.in.sh")
self.conn = self.instance.connection
# MOUNT AND FORMAT THE EBS VOLUMES (list with `lsblk`)
for i, k in enumerate(volumes):
if not fabric_files.exists(k.path):
with fabric_settings(warn_only=True):
sudo('sudo umount '+k.device)
sudo('yes | sudo mkfs -t ext4 '+k.device)
sudo('mkdir '+k.path)
sudo('sudo mount '+k.device+' '+k.path)
#ADD TO /etc/fstab SO AROUND AFTER REBOOT
sudo("sed -i '$ a\\"+k.device+" "+k.path+" ext4 defaults,nofail 0 2' /etc/fstab")
# TEST IT IS WORKING
sudo('mount -a')
# INCREASE THE FILE HANDLE LIMITS
with cd("/home/ec2-user/"):
File("./results/temp/sysctl.conf").delete()
get("/etc/sysctl.conf", "./results/temp/sysctl.conf", use_sudo=True)
lines = File("./results/temp/sysctl.conf").read()
if lines.find("fs.file-max = 100000") == -1:
lines += "\nfs.file-max = 100000"
lines = lines.replace("net.bridge.bridge-nf-call-ip6tables = 0", "")
lines = lines.replace("net.bridge.bridge-nf-call-iptables = 0", "")
lines = lines.replace("net.bridge.bridge-nf-call-arptables = 0", "")
File("./results/temp/sysctl.conf").write(lines)
put("./results/temp/sysctl.conf", "/etc/sysctl.conf", use_sudo=True)
sudo("sysctl -p")
# INCREASE FILE HANDLE PERMISSIONS
sudo("sed -i '$ a\\root soft nofile 50000' /etc/security/limits.conf")
sudo("sed -i '$ a\\root hard nofile 100000' /etc/security/limits.conf")
sudo("sed -i '$ a\\root memlock unlimited' /etc/security/limits.conf")
sudo("sed -i '$ a\\ec2-user soft nofile 50000' /etc/security/limits.conf")
sudo("sed -i '$ a\\ec2-user hard nofile 100000' /etc/security/limits.conf")
sudo("sed -i '$ a\\ec2-user memlock unlimited' /etc/security/limits.conf")
# EFFECTIVE LOGIN TO LOAD CHANGES TO FILE HANDLES
# sudo("sudo -i -u ec2-user")
if not fabric_files.exists("/data1/logs"):
sudo('mkdir /data1/logs')
sudo('mkdir /data1/heapdump')
#INCREASE NUMBER OF FILE HANDLES
# sudo("sysctl -w fs.file-max=64000")
# COPY CONFIG FILE TO ES DIR
if not fabric_files.exists("/usr/local/elasticsearch/config/elasticsearch.yml"):
yml = File("./examples/config/es_config.yml").read().replace("\r", "")
yml = expand_template(yml, {
"id": Random.hex(length=8),
"data_paths": ",".join("/data"+unicode(i+1) for i, _ in enumerate(volumes))
})
File("./results/temp/elasticsearch.yml").write(yml)
put("./results/temp/elasticsearch.yml", '/usr/local/elasticsearch/config/elasticsearch.yml', use_sudo=True)
# FOR SOME REASON THE export COMMAND DOES NOT SEEM TO WORK
# THIS SCRIPT SETS THE ES_MIN_MEM/ES_MAX_MEM EXPLICITLY
if not fabric_files.exists("/usr/local/elasticsearch/bin/elasticsearch.in.sh"):
sh = File("./examples/config/es_run.sh").read().replace("\r", "")
sh = expand_template(sh, {"memory": unicode(int(gigabytes/2))})
File("./results/temp/elasticsearch.in.sh").write(sh)
with cd("/home/ec2-user"):
put("./results/temp/elasticsearch.in.sh", './temp/elasticsearch.in.sh', use_sudo=True)
sudo("cp -f ./temp/elasticsearch.in.sh /usr/local/elasticsearch/bin/elasticsearch.in.sh")
def random_id():
return Random.hex(40)
def _scan_database(self):
# GET ALL RELATIONS
raw_relations = self.db.query("""
SELECT
table_schema,
table_name,
referenced_table_schema,
referenced_table_name,
referenced_column_name,
constraint_name,
column_name,
ordinal_position
FROM
information_schema.key_column_usage
WHERE
referenced_column_name IS NOT NULL
""",
param=self.settings.database)
if not raw_relations:
Log.error("No relations in the database")
for r in self.settings.add_relations:
try:
a, b = map(strings.trim, r.split("->"))
a = a.split(".")
b = b.split(".")
raw_relations.append(
Data(table_schema=a[0],
table_name=a[1],
referenced_table_schema=b[0],
referenced_table_name=b[1],
referenced_column_name=b[2],
constraint_name=Random.hex(20),
column_name=a[2],
ordinal_position=1))
except Exception as e:
Log.error("Could not parse {{line|quote}}", line=r, cause=e)
relations = jx.select(raw_relations,
[{
"name": "constraint.name",
"value": "constraint_name"
}, {
"name": "table.schema",
"value": "table_schema"
}, {
"name": "table.name",
"value": "table_name"
}, {
"name": "column.name",
"value": "column_name"
}, {
"name": "referenced.table.schema",
"value": "referenced_table_schema"
}, {
"name": "referenced.table.name",
"value": "referenced_table_name"
}, {
"name": "referenced.column.name",
"value": "referenced_column_name"
}, {
"name": "ordinal_position",
"value": "ordinal_position"
}])
# GET ALL TABLES
raw_tables = self.db.query("""
SELECT
t.table_schema,
t.table_name,
c.constraint_name,
c.constraint_type,
k.column_name,
k.ordinal_position
FROM
information_schema.tables t
LEFT JOIN
information_schema.table_constraints c on c.table_name=t.table_name AND c.table_schema=t.table_schema and (constraint_type='UNIQUE' or constraint_type='PRIMARY KEY')
LEFT JOIN
information_schema.key_column_usage k on k.constraint_name=c.constraint_name AND k.table_name=t.table_name and k.table_schema=t.table_schema
ORDER BY
t.table_schema,
t.table_name,
c.constraint_name,
k.ordinal_position,
k.column_name
""",
param=self.settings.database)
# ORGANIZE, AND PICK ONE UNIQUE CONSTRAINT FOR LINKING
tables = UniqueIndex(keys=["name", "schema"])
for t, c in jx.groupby(raw_tables, ["table_name", "table_schema"]):
c = wrap(list(c))
best_index = Null
is_referenced = False
is_primary = False
for g, w in jx.groupby(c, "constraint_name"):
if not g.constraint_name:
continue
w = list(w)
ref = False
for r in relations:
if r.table.name == t.table_name and r.table.schema == t.table_schema and r.constraint.name == g.constraint_name:
ref = True
is_prime = w[0].constraint_type == "PRIMARY"
reasons_this_one_is_better = [
best_index == None, # WE DO NOT HAVE A CANDIDATE YET
is_prime
and not is_primary, # PRIMARY KEYS ARE GOOD TO HAVE
is_primary == is_prime and ref and
not is_referenced, # REFERENCED UNIQUE TUPLES ARE GOOD TOO
is_primary == is_prime and ref == is_referenced and len(w)
< len(best_index) # THE SHORTER THE TUPLE, THE BETTER
]
if any(reasons_this_one_is_better):
is_primary = is_prime
is_referenced = ref
best_index = w
tables.add({
"name": t.table_name,
"schema": t.table_schema,
"id": [b.column_name for b in best_index]
})
fact_table = tables[self.settings.fact_table,
self.settings.database.schema]
ids_table = {
"alias": "t0",
"name": "__ids__",
"schema": fact_table.schema,
"id": fact_table.id
}
relations.extend(
wrap({
"constraint": {
"name": "__link_ids_to_fact_table__"
},
"table": ids_table,
"column": {
"name": c
},
"referenced": {
"table": fact_table,
"column": {
"name": c
}
},
"ordinal_position": i
}) for i, c in enumerate(fact_table.id))
tables.add(ids_table)
# GET ALL COLUMNS
raw_columns = self.db.query("""
SELECT
column_name,
table_schema,
table_name,
ordinal_position,
data_type
FROM
information_schema.columns
""",
param=self.settings.database)
reference_only_tables = [
r.split(".")[0] for r in self.settings.reference_only
if len(r.split(".")) == 2
]
reference_all_tables = [
r.split(".")[0] for r in self.settings.reference_only
if len(r.split(".")) == 1
]
foreign_column_table_schema_triples = {(r.column.name, r.table.name,
r.table.schema)
for r in relations}
referenced_column_table_schema_triples = {
(r.referenced.column.name, r.referenced.table.name,
r.referenced.table.schema)
for r in relations
}
related_column_table_schema_triples = foreign_column_table_schema_triples | referenced_column_table_schema_triples
columns = UniqueIndex(["column.name", "table.name", "table.schema"])
for c in raw_columns:
if c.table_name in reference_only_tables:
if c.table_name + "." + c.column_name in self.settings.reference_only:
include = True
reference = True
foreign = False
elif c.column_name in tables[(c.table_name,
c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = False
foreign = False
else:
include = False
reference = False
foreign = False
elif c.table_name in reference_all_tables:
# TABLES USED FOR REFERENCE, NO NESTED DOCUMENTS EXPECTED
if c.column_name in tables[(c.table_name, c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = True
foreign = False
elif (c.column_name, c.table_name,
c.table_schema) in foreign_column_table_schema_triples:
include = False
reference = False
foreign = True
else:
include = True
reference = False
foreign = False
elif c.column_name in tables[(c.table_name, c.table_schema)].id:
include = self.settings.show_foreign_keys
reference = False
foreign = False
elif (c.column_name, c.table_name,
c.table_schema) in foreign_column_table_schema_triples:
include = False
reference = False
foreign = True
elif (c.column_name, c.table_name,
c.table_schema) in referenced_column_table_schema_triples:
include = self.settings.show_foreign_keys
reference = False
foreign = False
else:
include = True
reference = False
foreign = False
rel = {
"column": {
"name": c.column_name,
"type": c.data_type
},
"table": {
"name": c.table_name,
"schema": c.table_schema
},
"ordinal_position": c.ordinal_position,
"is_id": c.column_name
in tables[(c.table_name, c.table_schema)].id,
"include": include, # TRUE IF THIS COLUMN IS OUTPUTTED
"reference":
reference, # TRUE IF THIS COLUMN REPRESENTS THE ROW
"foreign": foreign # TRUE IF THIS COLUMN POINTS TO ANOTHER ROW
}
columns.add(rel)
# ITERATE OVER ALL PATHS
todo = FlatList()
output_columns = FlatList()
nested_path_to_join = {}
all_nested_paths = [["."]]
def follow_paths(position, path, nested_path, done_relations,
no_nested_docs):
if position.name in self.settings.exclude:
return
if DEBUG:
Log.note("Trace {{path}}", path=path)
if position.name != "__ids__":
# USED TO CONFIRM WE CAN ACCESS THE TABLE (WILL THROW ERROR WHEN IF IT FAILS)
self.db.query("SELECT * FROM " +
quote_column(position.name, position.schema) +
" LIMIT 1")
if position.name in reference_all_tables:
no_nested_docs = True
if position.name in reference_only_tables:
return
curr_join_list = copy(nested_path_to_join[nested_path[0]])
# INNER OBJECTS
referenced_tables = list(
jx.groupby(
jx.filter(
relations, {
"eq": {
"table.name": position.name,
"table.schema": position.schema
}
}), "constraint.name"))
for g, constraint_columns in referenced_tables:
g = unwrap(g)
constraint_columns = deepcopy(constraint_columns)
if g["constraint.name"] in done_relations:
continue
if any(cc for cc in constraint_columns
if cc.referenced.table.name in self.settings.exclude):
continue
done_relations.add(g["constraint.name"])
many_to_one_joins = nested_path_to_join[nested_path[0]]
index = len(many_to_one_joins)
alias = "t" + text_type(index)
for c in constraint_columns:
c.referenced.table.alias = alias
c.table = position
many_to_one_joins.append({
"join_columns": constraint_columns,
"path": path,
"nested_path": nested_path
})
# referenced_table_path = join_field(split_field(path) + ["/".join(constraint_columns.referenced.table.name)])
# HANDLE THE COMMON *id SUFFIX
name = []
for a, b in zip(constraint_columns.column.name,
constraint_columns.referenced.table.name):
if a.startswith(b):
name.append(b)
elif a.endswith("_id"):
name.append(a[:-3])
else:
name.append(a)
referenced_column_path = join_field(
split_field(path) + ["/".join(name)])
col_pointer_name = relative_field(referenced_column_path,
nested_path[0])
# insert into nested1 VALUES (100, 10, 'aaa', -1);
# id.about.time.nested1 .ref=10
# id.about.time.nested1 .ref.name
for col in columns:
if col.table.name == constraint_columns[
0].referenced.table.name and col.table.schema == constraint_columns[
0].referenced.table.schema:
col_full_name = concat_field(
col_pointer_name, literal_field(col.column.name))
if col.is_id and col.table.name == fact_table.name and col.table.schema == fact_table.schema:
# ALWAYS SHOW THE ID OF THE FACT
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
True,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
})
elif col.column.name == constraint_columns[
0].column.name:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
if self.settings.show_foreign_keys else None
})
elif col.is_id:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
if self.settings.show_foreign_keys else None
})
elif col.reference:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_pointer_name
if not self.settings.show_foreign_keys else
col_full_name # REFERENCE FIELDS CAN REPLACE THE WHOLE OBJECT BEING REFERENCED
})
elif col.include:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
False,
"path":
referenced_column_path,
"nested_path":
nested_path,
"put":
col_full_name
})
if position.name in reference_only_tables:
continue
todo.append(
Data(position=copy(constraint_columns[0].referenced.table),
path=referenced_column_path,
nested_path=nested_path,
done_relations=copy(done_relations),
no_nested_docs=no_nested_docs))
# NESTED OBJECTS
if not no_nested_docs:
for g, constraint_columns in jx.groupby(
jx.filter(
relations, {
"eq": {
"referenced.table.name": position.name,
"referenced.table.schema": position.schema
}
}), "constraint.name"):
g = unwrap(g)
constraint_columns = deepcopy(constraint_columns)
if g["constraint.name"] in done_relations:
continue
done_relations.add(g["constraint.name"])
many_table = set(constraint_columns.table.name)
if not (many_table - self.settings.exclude):
continue
referenced_column_path = join_field(
split_field(path) + ["/".join(many_table)])
new_nested_path = [referenced_column_path] + nested_path
all_nested_paths.append(new_nested_path)
# if new_path not in self.settings.include:
# Log.note("Exclude nested path {{path}}", path=new_path)
# continue
one_to_many_joins = nested_path_to_join[
referenced_column_path] = copy(curr_join_list)
index = len(one_to_many_joins)
alias = "t" + text_type(index)
for c in constraint_columns:
c.table.alias = alias
c.referenced.table = position
one_to_many_joins.append(
set_default({}, g, {
"children": True,
"join_columns": constraint_columns,
"path": path,
"nested_path": nested_path
}))
# insert into nested1 VALUES (100, 10, 'aaa', -1); # id.about.time.nested1 .ref=10# id.about.time.nested1 .ref.name
for col in columns:
if col.table.name == constraint_columns[
0].table.name and col.table.schema == constraint_columns[
0].table.schema:
col_full_name = join_field(
split_field(referenced_column_path)
[len(split_field(new_nested_path[0])):] +
[literal_field(col.column.name)])
if col.column.name == constraint_columns[
0].column.name:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if
self.settings.show_foreign_keys else None
})
elif col.is_id:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if
self.settings.show_foreign_keys else None
})
else:
c_index = len(output_columns)
output_columns.append({
"table_alias":
alias,
"column_alias":
"c" + text_type(c_index),
"column":
col,
"sort":
col.is_id,
"path":
referenced_column_path,
"nested_path":
new_nested_path,
"put":
col_full_name if col.include else None
})
todo.append(
Data(position=constraint_columns[0].table,
path=referenced_column_path,
nested_path=new_nested_path,
done_relations=copy(done_relations),
no_nested_docs=no_nested_docs))
path = "."
nested_path = [path]
nested_path_to_join["."] = [{
"path":
path,
"join_columns": [{
"referenced": {
"table": ids_table
}
}],
"nested_path":
nested_path
}]
todo.append(
Data(position=ids_table,
path=path,
nested_path=nested_path,
done_relations=set(),
no_nested_docs=False))
while todo:
item = todo.pop(0)
follow_paths(**item)
self.all_nested_paths = all_nested_paths
self.nested_path_to_join = nested_path_to_join
self.columns = output_columns
def _install_es(self, gigabytes):
volumes = self.instance.markup.drives
if not fabric_files.exists("/usr/local/elasticsearch"):
with cd("/home/ec2-user/"):
run("mkdir -p temp")
if not File(LOCAL_JRE).exists:
Log.error(
"Expecting {{file}} on manager to spread to ES instances",
file=LOCAL_JRE)
with cd("/home/ec2-user/temp"):
run('rm -f ' + JRE)
put("resources/" + JRE, JRE)
sudo("rpm -i " + JRE)
sudo(
"alternatives --install /usr/bin/java java /usr/java/default/bin/java 20000"
)
run("export JAVA_HOME=/usr/java/default")
with cd("/home/ec2-user/"):
run('wget https://download.elasticsearch.org/elasticsearch/elasticsearch/elasticsearch-1.7.1.tar.gz'
)
run('tar zxfv elasticsearch-1.7.1.tar.gz')
sudo('mkdir /usr/local/elasticsearch')
sudo('cp -R elasticsearch-1.7.1/* /usr/local/elasticsearch/')
with cd('/usr/local/elasticsearch/'):
# BE SURE TO MATCH THE PLUGLIN WITH ES VERSION
# https://github.com/elasticsearch/elasticsearch-cloud-aws
sudo(
'bin/plugin -install elasticsearch/elasticsearch-cloud-aws/2.7.1'
)
#REMOVE THESE FILES, WE WILL REPLACE THEM WITH THE CORRECT VERSIONS AT THE END
sudo("rm -f /usr/local/elasticsearch/config/elasticsearch.yml")
sudo("rm -f /usr/local/elasticsearch/bin/elasticsearch.in.sh")
self.conn = self.instance.connection
# MOUNT AND FORMAT THE EBS VOLUMES (list with `lsblk`)
for i, k in enumerate(volumes):
if not fabric_files.exists(k.path):
with fabric_settings(warn_only=True):
sudo('sudo umount ' + k.device)
sudo('yes | sudo mkfs -t ext4 ' + k.device)
sudo('mkdir ' + k.path)
sudo('sudo mount ' + k.device + ' ' + k.path)
#ADD TO /etc/fstab SO AROUND AFTER REBOOT
sudo("sed -i '$ a\\" + k.device + " " + k.path +
" ext4 defaults,nofail 0 2' /etc/fstab")
# TEST IT IS WORKING
sudo('mount -a')
# INCREASE THE FILE HANDLE LIMITS
with cd("/home/ec2-user/"):
File("./results/temp/sysctl.conf").delete()
get("/etc/sysctl.conf",
"./results/temp/sysctl.conf",
use_sudo=True)
lines = File("./results/temp/sysctl.conf").read()
if lines.find("fs.file-max = 100000") == -1:
lines += "\nfs.file-max = 100000"
lines = lines.replace("net.bridge.bridge-nf-call-ip6tables = 0",
"")
lines = lines.replace("net.bridge.bridge-nf-call-iptables = 0", "")
lines = lines.replace("net.bridge.bridge-nf-call-arptables = 0",
"")
File("./results/temp/sysctl.conf").write(lines)
put("./results/temp/sysctl.conf",
"/etc/sysctl.conf",
use_sudo=True)
sudo("sysctl -p")
# INCREASE FILE HANDLE PERMISSIONS
sudo("sed -i '$ a\\root soft nofile 50000' /etc/security/limits.conf")
sudo("sed -i '$ a\\root hard nofile 100000' /etc/security/limits.conf")
sudo("sed -i '$ a\\root memlock unlimited' /etc/security/limits.conf")
sudo(
"sed -i '$ a\\ec2-user soft nofile 50000' /etc/security/limits.conf"
)
sudo(
"sed -i '$ a\\ec2-user hard nofile 100000' /etc/security/limits.conf"
)
sudo(
"sed -i '$ a\\ec2-user memlock unlimited' /etc/security/limits.conf"
)
# EFFECTIVE LOGIN TO LOAD CHANGES TO FILE HANDLES
# sudo("sudo -i -u ec2-user")
if not fabric_files.exists("/data1/logs"):
sudo('mkdir /data1/logs')
sudo('mkdir /data1/heapdump')
#INCREASE NUMBER OF FILE HANDLES
# sudo("sysctl -w fs.file-max=64000")
# COPY CONFIG FILE TO ES DIR
if not fabric_files.exists(
"/usr/local/elasticsearch/config/elasticsearch.yml"):
yml = File("./examples/config/es_config.yml").read().replace(
"\r", "")
yml = expand_template(
yml, {
"id":
Random.hex(length=8),
"data_paths":
",".join("/data" + unicode(i + 1)
for i, _ in enumerate(volumes))
})
File("./results/temp/elasticsearch.yml").write(yml)
put("./results/temp/elasticsearch.yml",
'/usr/local/elasticsearch/config/elasticsearch.yml',
use_sudo=True)
# FOR SOME REASON THE export COMMAND DOES NOT SEEM TO WORK
# THIS SCRIPT SETS THE ES_MIN_MEM/ES_MAX_MEM EXPLICITLY
if not fabric_files.exists(
"/usr/local/elasticsearch/bin/elasticsearch.in.sh"):
sh = File("./examples/config/es_run.sh").read().replace("\r", "")
sh = expand_template(sh, {"memory": unicode(int(gigabytes / 2))})
File("./results/temp/elasticsearch.in.sh").write(sh)
with cd("/home/ec2-user"):
put("./results/temp/elasticsearch.in.sh",
'./temp/elasticsearch.in.sh',
use_sudo=True)
sudo(
"cp -f ./temp/elasticsearch.in.sh /usr/local/elasticsearch/bin/elasticsearch.in.sh"
)
def random_id():
return Random.hex(40)