Example #1
0
 def _match(self, lab_l1, lab_l2, equal):
     d1, d2 = self._d1, self._d2
     mapping = self._mapping
     # for each leaf label in both tree1 and tree2
     l = intersection(lab_l1.keys(), lab_l2.keys())
     # sort list to avoid differences between python version
     l.sort()
     for label in l:
         s1 = lab_l1[label]
         s2 = lab_l2[label]
         # compute the longest common subsequence
         common = lcs2(s1, s2, equal)
         # for each pair of nodes (x,y) in the lcs
         for x, y in common:
             # add (x,y) to the mapping
             mapping.append((x, y))
             # mark node from tree 1 as mapped
             x[N_MAPPED] = TRUE
             # fill the mapping cache
             for n in get_ancestors(x, []):
                 d1[(id(n), id(x))] = 1
             for n in get_ancestors(y, []):
                 d2[(id(n), id(y))] = 1
Example #2
0
 def _align_children(self, w, x):
     """ align children to correct misaligned nodes
     """
     _partner = partner
     # mark all children of w an d as "out of order"
     self._childs_out_of_order(w)
     self._childs_out_of_order(x)
     # s1: children of w whose partner is children of x
     s1 = [n for n in w[N_CHILDS] if in_ref(x[N_CHILDS], _partner(0,n))]
     # s2: children of x whose partners are children of w
     s2 = [n for n in x[N_CHILDS] if in_ref(w[N_CHILDS], _partner(1,n))]
     # compute the longest common subsequence
     s = lcs2(s1, s2, has_couple)
     # mark each (a,b) from lcs in order
     for a, b in s:
         a[N_INORDER] = b[N_INORDER] = TRUE
         s1.pop(index_ref(s1, a))
     # s: a E T1, b E T2, (a,b) E M, (a;b) not E s
     for a in s1:
         b = _partner(0, a)
         # mark a and b in order
         a[N_INORDER] = b[N_INORDER] = TRUE
         k = self._find_pos(b)
         self._make_move(a, w, k)