def gisinf(x):
# copied from numpy.testing._private.utils
from numpy.core import isinf, errstate
with errstate(invalid="ignore"):
st = isinf(x)
if isinstance(st, type(NotImplemented)):
raise TypeError("isinf not supported for this type")
return st
def gisinf(x):
"""like isinf, but always raise an error if type not supported instead of
returning a TypeError object.
Notes
-----
isinf and other ufunc sometimes return a NotImplementedType object instead
of raising any exception. This function is a wrapper to make sure an
exception is always raised.
This should be removed once this problem is solved at the Ufunc level."""
from numpy.core import isinf
st = isinf(x)
if isinstance(st, types.NotImplementedType):
raise TypeError("isinf not supported for this type")
return st
def gisinf(x):
"""like isinf, but always raise an error if type not supported instead of
returning a TypeError object.
Notes
-----
isinf and other ufunc sometimes return a NotImplementedType object instead
of raising any exception. This function is a wrapper to make sure an
exception is always raised.
This should be removed once this problem is solved at the Ufunc level."""
from numpy.core import isinf
st = isinf(x)
if isinstance(st, types.NotImplementedType):
raise TypeError("isinf not supported for this type")
return st
def assert_array_compare(comparison, x, y, err_msg='', verbose=True,
header=''):
from numpy.core import array, isnan, isinf, isna, any, all, inf
x = array(x, copy=False, subok=True)
y = array(y, copy=False, subok=True)
def isnumber(x):
return x.dtype.char in '?bhilqpBHILQPefdgFDG'
def chk_same_position(x_id, y_id, hasval='nan'):
"""Handling nan/inf: check that x and y have the nan/inf at the same
locations."""
try:
assert_array_equal(x_id, y_id)
except AssertionError:
msg = build_err_msg([x, y],
err_msg + '\nx and y %s location mismatch:' \
% (hasval), verbose=verbose, header=header,
names=('x', 'y'))
raise AssertionError(msg)
try:
cond = (x.shape==() or y.shape==()) or x.shape == y.shape
if not cond:
msg = build_err_msg([x, y],
err_msg
+ '\n(shapes %s, %s mismatch)' % (x.shape,
y.shape),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
if isnumber(x) and isnumber(y):
x_isna, y_isna = isna(x), isna(y)
x_isnan, y_isnan = isnan(x), isnan(y)
x_isinf, y_isinf = isinf(x), isinf(y)
# Remove any NAs from the isnan and isinf arrays
if x.ndim == 0:
if x_isna:
x_isnan = False
x_isinf = False
else:
x_isnan[x_isna] = False
x_isinf[x_isna] = False
if y.ndim == 0:
if y_isna:
y_isnan = False
y_isinf = False
else:
y_isnan[y_isna] = False
y_isinf[y_isna] = False
# Validate that the special values are in the same place
if any(x_isnan) or any(y_isnan):
chk_same_position(x_isnan, y_isnan, hasval='nan')
if any(x_isinf) or any(y_isinf):
# Check +inf and -inf separately, since they are different
chk_same_position(x == +inf, y == +inf, hasval='+inf')
chk_same_position(x == -inf, y == -inf, hasval='-inf')
if any(x_isna) or any(y_isna):
chk_same_position(x_isna, y_isna, hasval='NA')
# Combine all the special values
x_id, y_id = x_isnan, y_isnan
x_id |= x_isinf
y_id |= y_isinf
x_id |= x_isna
y_id |= y_isna
# Only do the comparison if actual values are left
if all(x_id):
return
if any(x_id):
val = comparison(x[~x_id], y[~y_id])
else:
val = comparison(x, y)
# field-NA isn't supported yet, so skip struct dtypes for this
elif (not x.dtype.names and not y.dtype.names) and \
(any(isna(x)) or any(isna(y))):
x_isna, y_isna = isna(x), isna(y)
if any(x_isna) or any(y_isna):
chk_same_position(x_isna, y_isna, hasval='NA')
if all(x_isna):
return
val = comparison(x[~x_isna], y[~y_isna])
else:
val = comparison(x,y)
if isinstance(val, bool):
cond = val
reduced = [0]
else:
reduced = val.ravel()
cond = reduced.all()
reduced = reduced.tolist()
if not cond:
match = 100-100.0*reduced.count(1)/len(reduced)
msg = build_err_msg([x, y],
err_msg
+ '\n(mismatch %s%%)' % (match,),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
except ValueError, e:
import traceback
efmt = traceback.format_exc()
header = 'error during assertion:\n\n%s\n\n%s' % (efmt, header)
msg = build_err_msg([x, y], err_msg, verbose=verbose, header=header,
names=('x', 'y'))
raise ValueError(msg)
def assert_array_compare(comparison, x, y, err_msg='', verbose=True,
header=''):
from numpy.core import array, isnan, isinf, any
x = array(x, copy=False, subok=True)
y = array(y, copy=False, subok=True)
def isnumber(x):
return x.dtype.char in '?bhilqpBHILQPfdgFDG'
def chk_same_position(x_id, y_id, hasval='nan'):
"""Handling nan/inf: check that x and y have the nan/inf at the same
locations."""
try:
assert_array_equal(x_id, y_id)
except AssertionError:
msg = build_err_msg([x, y],
err_msg + '\nx and y %s location mismatch:' \
% (hasval), verbose=verbose, header=header,
names=('x', 'y'))
raise AssertionError(msg)
try:
cond = (x.shape==() or y.shape==()) or x.shape == y.shape
if not cond:
msg = build_err_msg([x, y],
err_msg
+ '\n(shapes %s, %s mismatch)' % (x.shape,
y.shape),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
if (isnumber(x) and isnumber(y)) and (any(isnan(x)) or any(isnan(y))):
x_id = isnan(x)
y_id = isnan(y)
chk_same_position(x_id, y_id, hasval='nan')
# If only one item, it was a nan, so just return
if x.size == y.size == 1:
return
val = comparison(x[~x_id], y[~y_id])
elif (isnumber(x) and isnumber(y)) and (any(isinf(x)) or any(isinf(y))):
x_id = isinf(x)
y_id = isinf(y)
chk_same_position(x_id, y_id, hasval='inf')
# If only one item, it was a inf, so just return
if x.size == y.size == 1:
return
val = comparison(x[~x_id], y[~y_id])
else:
val = comparison(x,y)
if isinstance(val, bool):
cond = val
reduced = [0]
else:
reduced = val.ravel()
cond = reduced.all()
reduced = reduced.tolist()
if not cond:
match = 100-100.0*reduced.count(1)/len(reduced)
msg = build_err_msg([x, y],
err_msg
+ '\n(mismatch %s%%)' % (match,),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
except ValueError, e:
header = 'error during assertion:\n%s\n\n%s' % (e, header)
msg = build_err_msg([x, y], err_msg, verbose=verbose, header=header,
names=('x', 'y'))
raise ValueError(msg)
def assert_array_compare(comparison, x, y, err_msg="", verbose=True, header=""):
from numpy.core import array, isnan, isinf, any, all, inf
x = array(x, copy=False, subok=True)
y = array(y, copy=False, subok=True)
def isnumber(x):
return x.dtype.char in "?bhilqpBHILQPefdgFDG"
def chk_same_position(x_id, y_id, hasval="nan"):
"""Handling nan/inf: check that x and y have the nan/inf at the same
locations."""
try:
assert_array_equal(x_id, y_id)
except AssertionError:
msg = build_err_msg(
[x, y],
err_msg + "\nx and y %s location mismatch:" % (hasval),
verbose=verbose,
header=header,
names=("x", "y"),
)
raise AssertionError(msg)
try:
cond = (x.shape == () or y.shape == ()) or x.shape == y.shape
if not cond:
msg = build_err_msg(
[x, y],
err_msg + "\n(shapes %s, %s mismatch)" % (x.shape, y.shape),
verbose=verbose,
header=header,
names=("x", "y"),
)
if not cond:
raise AssertionError(msg)
if isnumber(x) and isnumber(y):
x_isnan, y_isnan = isnan(x), isnan(y)
x_isinf, y_isinf = isinf(x), isinf(y)
# Validate that the special values are in the same place
if any(x_isnan) or any(y_isnan):
chk_same_position(x_isnan, y_isnan, hasval="nan")
if any(x_isinf) or any(y_isinf):
# Check +inf and -inf separately, since they are different
chk_same_position(x == +inf, y == +inf, hasval="+inf")
chk_same_position(x == -inf, y == -inf, hasval="-inf")
# Combine all the special values
x_id, y_id = x_isnan, y_isnan
x_id |= x_isinf
y_id |= y_isinf
# Only do the comparison if actual values are left
if all(x_id):
return
if any(x_id):
val = comparison(x[~x_id], y[~y_id])
else:
val = comparison(x, y)
else:
val = comparison(x, y)
if isinstance(val, bool):
cond = val
reduced = [0]
else:
reduced = val.ravel()
cond = reduced.all()
reduced = reduced.tolist()
if not cond:
match = 100 - 100.0 * reduced.count(1) / len(reduced)
msg = build_err_msg(
[x, y], err_msg + "\n(mismatch %s%%)" % (match,), verbose=verbose, header=header, names=("x", "y")
)
if not cond:
raise AssertionError(msg)
except ValueError as e:
import traceback
efmt = traceback.format_exc()
header = "error during assertion:\n\n%s\n\n%s" % (efmt, header)
msg = build_err_msg([x, y], err_msg, verbose=verbose, header=header, names=("x", "y"))
raise ValueError(msg)
def assert_array_compare(comparison, x, y, err_msg='', verbose=True,
header=''):
from numpy.core import array, isnan, isinf, any
x = array(x, copy=False, subok=True)
y = array(y, copy=False, subok=True)
def isnumber(x):
return x.dtype.char in '?bhilqpBHILQPfdgFDG'
def chk_same_position(x_id, y_id, hasval='nan'):
"""Handling nan/inf: check that x and y have the nan/inf at the same
locations."""
try:
assert_array_equal(x_id, y_id)
except AssertionError:
msg = build_err_msg([x, y],
err_msg + '\nx and y %s location mismatch:' \
% (hasval), verbose=verbose, header=header,
names=('x', 'y'))
raise AssertionError(msg)
try:
cond = (x.shape==() or y.shape==()) or x.shape == y.shape
if not cond:
msg = build_err_msg([x, y],
err_msg
+ '\n(shapes %s, %s mismatch)' % (x.shape,
y.shape),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
if (isnumber(x) and isnumber(y)) and (any(isnan(x)) or any(isnan(y))):
x_id = isnan(x)
y_id = isnan(y)
chk_same_position(x_id, y_id, hasval='nan')
# If only one item, it was a nan, so just return
if x.size == y.size == 1:
return
val = comparison(x[~x_id], y[~y_id])
elif (isnumber(x) and isnumber(y)) and (any(isinf(x)) or any(isinf(y))):
x_id = isinf(x)
y_id = isinf(y)
chk_same_position(x_id, y_id, hasval='inf')
# If only one item, it was a inf, so just return
if x.size == y.size == 1:
return
val = comparison(x[~x_id], y[~y_id])
else:
val = comparison(x,y)
if isinstance(val, bool):
cond = val
reduced = [0]
else:
reduced = val.ravel()
cond = reduced.all()
reduced = reduced.tolist()
if not cond:
match = 100-100.0*reduced.count(1)/len(reduced)
msg = build_err_msg([x, y],
err_msg
+ '\n(mismatch %s%%)' % (match,),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
except ValueError, e:
header = 'error during assertion:\n%s\n\n%s' % (e, header)
msg = build_err_msg([x, y], err_msg, verbose=verbose, header=header,
names=('x', 'y'))
raise ValueError(msg)
def assert_array_compare(comparison, x, y, err_msg='', verbose=True,
header=''):
from numpy.core import array, isnan, isinf, any, all, inf
x = array(x, copy=False, subok=True)
y = array(y, copy=False, subok=True)
def isnumber(x):
return x.dtype.char in '?bhilqpBHILQPefdgFDG'
def chk_same_position(x_id, y_id, hasval='nan'):
"""Handling nan/inf: check that x and y have the nan/inf at the same
locations."""
try:
assert_array_equal(x_id, y_id)
except AssertionError:
msg = build_err_msg([x, y],
err_msg + '\nx and y %s location mismatch:' \
% (hasval), verbose=verbose, header=header,
names=('x', 'y'))
raise AssertionError(msg)
try:
cond = (x.shape==() or y.shape==()) or x.shape == y.shape
if not cond:
msg = build_err_msg([x, y],
err_msg
+ '\n(shapes %s, %s mismatch)' % (x.shape,
y.shape),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
if isnumber(x) and isnumber(y):
x_isnan, y_isnan = isnan(x), isnan(y)
x_isinf, y_isinf = isinf(x), isinf(y)
# Validate that the special values are in the same place
if any(x_isnan) or any(y_isnan):
chk_same_position(x_isnan, y_isnan, hasval='nan')
if any(x_isinf) or any(y_isinf):
# Check +inf and -inf separately, since they are different
chk_same_position(x == +inf, y == +inf, hasval='+inf')
chk_same_position(x == -inf, y == -inf, hasval='-inf')
# Combine all the special values
x_id, y_id = x_isnan, y_isnan
x_id |= x_isinf
y_id |= y_isinf
# Only do the comparison if actual values are left
if all(x_id):
return
if any(x_id):
val = comparison(x[~x_id], y[~y_id])
else:
val = comparison(x, y)
else:
val = comparison(x,y)
if isinstance(val, bool):
cond = val
reduced = [0]
else:
reduced = val.ravel()
cond = reduced.all()
reduced = reduced.tolist()
if not cond:
match = 100-100.0*reduced.count(1)/len(reduced)
msg = build_err_msg([x, y],
err_msg
+ '\n(mismatch %s%%)' % (match,),
verbose=verbose, header=header,
names=('x', 'y'))
if not cond :
raise AssertionError(msg)
except ValueError as e:
import traceback
efmt = traceback.format_exc()
header = 'error during assertion:\n\n%s\n\n%s' % (efmt, header)
msg = build_err_msg([x, y], err_msg, verbose=verbose, header=header,
names=('x', 'y'))
raise ValueError(msg)
