def configuration(parent_package='', top_path=None):
import numpy
from numpy.distutils.misc_util import Configuration
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info, lapack_opt_info
from os.path import join, exists
config = Configuration('registration', parent_package, top_path)
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
lapack_extra_compile_args = []
lapack_extra_link_args = []
for l in [lapack_mkl_info().get_info(), lapack_opt_info().get_info(), lapack_info().get_info()]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
lapack_extra_compile_args += l['extra_compile_args']
lapack_extra_link_args += l['extra_link_args']
break
except:
pass
config.add_subpackage('metric')
config.add_subpackage('model')
config.add_subpackage('optimizer')
return config
def configuration(parent_package='', top_path=None):
import numpy
from numpy.distutils.misc_util import Configuration
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info, lapack_opt_info
from os.path import join, exists
config = Configuration('registration', parent_package, top_path)
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
lapack_extra_compile_args = []
lapack_extra_link_args = []
for l in [
lapack_mkl_info().get_info(),
lapack_opt_info().get_info(),
lapack_info().get_info()
]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
lapack_extra_compile_args += l['extra_compile_args']
lapack_extra_link_args += l['extra_link_args']
break
except:
pass
config.add_subpackage('metric')
config.add_subpackage('model')
config.add_subpackage('optimizer')
return config
def configuration(parent_package='', top_path=None):
import numpy
from numpy.distutils.misc_util import Configuration
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info, lapack_opt_info
from os.path import join, exists
config = Configuration('metric', parent_package, top_path)
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
lapack_extra_compile_args = []
lapack_extra_link_args = []
for l in [
lapack_mkl_info().get_info(),
lapack_opt_info().get_info(),
lapack_info().get_info()
]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
lapack_extra_compile_args += l['extra_compile_args']
lapack_extra_link_args += l['extra_link_args']
break
except:
pass
config.add_extension(
'_metrics_densities',
define_macros=[('MAJOR_VERSION', '0'), ('MINOR_VERSION', '1')],
sources=[
'_metrics_densities.c',
],
include_dirs=[numpy.get_include()] + lapack_include_dirs,
libraries=lapack_libs,
library_dirs=lapack_lib_dirs,
extra_compile_args=lapack_extra_compile_args + ['-fopenmp'],
extra_link_args=lapack_extra_link_args + ['-fopenmp'],
)
return config
def configuration(parent_package='', top_path=None):
import numpy
from numpy.distutils.misc_util import Configuration
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info, lapack_opt_info
from os.path import join, exists
config = Configuration('metric', parent_package, top_path)
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
lapack_extra_compile_args = []
lapack_extra_link_args = []
for l in [lapack_mkl_info().get_info(), lapack_opt_info().get_info(), lapack_info().get_info()]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
lapack_extra_compile_args += l['extra_compile_args']
lapack_extra_link_args += l['extra_link_args']
break
except:
pass
config.add_extension(
'_metrics_densities',
define_macros=[
('MAJOR_VERSION', '0'),
('MINOR_VERSION', '1')
],
sources=[
'_metrics_densities.c',
],
include_dirs=[numpy.get_include()] + lapack_include_dirs,
libraries=lapack_libs,
library_dirs=lapack_lib_dirs,
extra_compile_args=lapack_extra_compile_args + ['-fopenmp'],
extra_link_args=lapack_extra_link_args + ['-fopenmp'],
)
return config
DESCRIPTION = 'Scikits sparse matrix package'
LONG_DESCRIPTION = descr
MAINTAINER = 'Nathaniel Smith',
MAINTAINER_EMAIL = '*****@*****.**',
URL = 'https://github.com/njsmith/scikits-sparse/'
LICENSE = 'GPL'
DOWNLOAD_URL = "https://github.com/njsmith/scikits-sparse/downloads"
VERSION = '0.1+dev'
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
for l in [lapack_mkl_info().get_info(), lapack_info().get_info()]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
break
except:
pass
import numpy as np
# the monkey patch trick so that cython is called on pyx files.
import monkey
if __name__ == "__main__":
setup(install_requires = ['numpy', 'scipy'],
namespace_packages = ['scikits'],
DESCRIPTION = 'Scikits sparse matrix package'
LONG_DESCRIPTION = descr
MAINTAINER = 'Nathaniel Smith',
MAINTAINER_EMAIL = '*****@*****.**',
URL = 'https://github.com/njsmith/scikits-sparse/'
LICENSE = 'GPL'
DOWNLOAD_URL = "https://github.com/njsmith/scikits-sparse/downloads"
VERSION = '0.1+dev'
from numpy.distutils.core import setup, Extension
from numpy.distutils.system_info import lapack_info, lapack_mkl_info
lapack_libs = []
lapack_lib_dirs = []
lapack_include_dirs = []
for l in [lapack_mkl_info().get_info(), lapack_info().get_info()]:
try:
lapack_libs += l['libraries']
lapack_lib_dirs += l['library_dirs']
lapack_include_dirs += l['include_dirs']
break
except:
pass
import numpy as np
# the monkey patch trick so that cython is called on pyx files.
import monkey
if __name__ == "__main__":
setup(
install_requires=['numpy', 'scipy'],
import numpy as np
from distutils.core import setup
from Cython.Distutils import Extension, build_ext
from numpy.distutils import system_info
# this is probably not very portable!
try:
# first look for OpenBLAS libs/include
info = system_info.openblas_info()
except AttributeError:
# old versions of numpy don't have this config field - try and look for
# standard LAPACK info
info = system_info.lapack_info()
lapack_libs = ['-l' + name for name in info.get_libraries()]
include_dirs = info.get_include_dirs() + [np.get_include()]
library_dirs = info.get_lib_dirs()
# NB: use dotted relative module names here!
# -----------------------------------------------------------------------------
# extra compiler flags
CF = ['-O3']
gte = Extension(
name="cymodules._fast_gte",
sources=["cymodules/_fast_gte.pyx"],
extra_compile_args=CF + ['-fopenmp'],
extra_link_args=['-fopenmp'],
)
import numpy as np
from distutils.core import setup
from Cython.Distutils import Extension, build_ext
from numpy.distutils import system_info
# this is probably not very portable!
try:
# first look for OpenBLAS libs/include
info = system_info.openblas_info()
except AttributeError:
# old versions of numpy don't have this config field - try and look for
# standard LAPACK info
info = system_info.lapack_info()
lapack_libs = ['-l' + name for name in info.get_libraries()]
include_dirs = info.get_include_dirs() + [np.get_include()]
library_dirs = info.get_lib_dirs()
# NB: use dotted relative module names here!
# -----------------------------------------------------------------------------
# extra compiler flags
CF = ['-O3']
gte = Extension(
name="cymodules._fast_gte",
sources=["cymodules/_fast_gte.pyx"],
extra_compile_args=CF + ['-fopenmp'],
extra_link_args=['-fopenmp'],
)
